View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_3 (Length: 612)
Name: NF4644_low_3
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 150 - 367
Target Start/End: Complemental strand, 12058257 - 12058041
Alignment:
| Q |
150 |
ataagaaagcaatggatgtaaattagatctataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcct |
249 |
Q |
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| T |
12058257 |
ataagaaagcaatggatgtaaattaaatctataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcct |
12058158 |
T |
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| Q |
250 |
ttgaaatccaggtattggtttcaatgaggtatatgcactagttgtaaggcttgaaacaattagaatagttgtggccataacaacatataaaggttggaag |
349 |
Q |
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| T |
12058157 |
ttgaaatccaggtattggtttcaatgaggtatatgcactagttgtaaggcttgaaacaatta-aatagttgtggccataacaacatataaaggttggaag |
12058059 |
T |
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| Q |
350 |
atgcattaccttgatgta |
367 |
Q |
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| T |
12058058 |
atgcattaccttgatgta |
12058041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 363 - 596
Target Start/End: Complemental strand, 12054523 - 12054295
Alignment:
| Q |
363 |
atgtaaagtatacatttttgaatggtcctttagatgaagaaccttgagtgaagaaaccaccaag-ttttgagatcaaagcacaagaagggaagatgtata |
461 |
Q |
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| T |
12054523 |
atgtaaagtatacatttttgaatggtcctttagatggagaaccttgagtcaagaaaccaccaagtttttgagatcaaagcacaagaagggaa---gtata |
12054427 |
T |
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| Q |
462 |
gattgggaaaaaatatgtatcccttaaagtaggcccccagtgctgga-ttttttgttgttgatatctttatcattaaatcatgattcactaaatgcatat |
560 |
Q |
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| T |
12054426 |
gattgggaaaagctatgtatcccttaaagtaggcccccagtgctggatttttttgttgttgatatctttatcattaaatcatgattcactaaatgc---- |
12054331 |
T |
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| Q |
561 |
atatacgagcatgaagtatatttaaaaggatctaac |
596 |
Q |
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| T |
12054330 |
atatacgagcatgaagtatatttaaaaggatctaac |
12054295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 12059552 - 12059402
Alignment:
| Q |
4 |
ataggggaattgatgatggttgaaacaaaaccaatcaacttgaatgaagcaatgaaggattcaaattggttagtagttatgaaattggagtttaaataca |
103 |
Q |
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| T |
12059552 |
ataggggaagttatgatggttgaaacaaaaccaatcaacttgaatgaagcaatgaaggattcaaattggttagtagttatgaaattggagtttaaataca |
12059453 |
T |
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| Q |
104 |
tagagaagaatagaacatgcgagcagtgagcttgtaatcgggtatgataag |
154 |
Q |
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| T |
12059452 |
tagagaagaatagaacatgtgagcagtgagcttgtaatcgggtatgataag |
12059402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 179 - 397
Target Start/End: Original strand, 6133658 - 6133878
Alignment:
| Q |
179 |
tataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcctttgaaatccaggtattggtttcaatgagg |
278 |
Q |
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| T |
6133658 |
tataagctaaaattgagaccaaatggtgaaatttctaa-tataaggaaaaactggtagcaagaggtttccttcaaaatctaggtattgatttaaatgagg |
6133756 |
T |
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| Q |
279 |
tatatgcactagttgtaa---ggcttgaaacaattagaatagttgtggccataacaacatataaaggttggaagatgcattaccttgatgtaaagtatac |
375 |
Q |
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| T |
6133757 |
attatgcacaagttgcaacaaggcttaaaacaattagaatagtggttgccataacaagatataaaggttggaaaatgcatcaacttgatgtaaagtctgc |
6133856 |
T |
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| Q |
376 |
atttttgaatggtcctttagat |
397 |
Q |
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| T |
6133857 |
attttttaatggtccattagat |
6133878 |
T |
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