View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4644_low_4 (Length: 568)
Name: NF4644_low_4
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 95 - 368
Target Start/End: Original strand, 36145781 - 36146054
Alignment:
| Q |
95 |
attgttatccaagacattcaatgtcgccctcttgtgtccaaattatttttcaaagcccaagtgcctctttcaacaattttttcatttattagaagatcaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36145781 |
attgttatccaagacattcaatgtcgccctcttgtgtccaaattatttttcaaagcccaagtgcctctttcaacaattttttcatttattagaagatcaa |
36145880 |
T |
|
| Q |
195 |
cgttcatcacctcaaaaaatgaataatcaaagttcatagattatttccatatgcctacgattatttttatagagttccataccaagatacttttacacag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36145881 |
cgttcatcacctcaaaaaatgaataatcaaagttcatagattatttccatatgtctacgattatttttatagagttccataccaagatacttttacacag |
36145980 |
T |
|
| Q |
295 |
tttttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcgtgc |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36145981 |
tttttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcgtgc |
36146054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 36146135 - 36146236
Alignment:
| Q |
449 |
ggacaatatatcaaaagatcggtgcaatgtaacaacttagaaatatatataatttattgttccagttaggaatactgcatgagaaattcttgattgagcg |
548 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36146135 |
ggacaatatatcaaaagataggcgcaatgtaacaacttagaaatatatataatttattgttctagttaggaatactgcatgagaaattcttgattgagcg |
36146234 |
T |
|
| Q |
549 |
ag |
550 |
Q |
| |
|
|| |
|
|
| T |
36146235 |
ag |
36146236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 36073683 - 36073754
Alignment:
| Q |
296 |
ttttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcgtg |
367 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
36073683 |
ttttagatcagtcatcataaggttccaataagcttttaaaaacatgtaaggaaatattaaaagacatgcgtg |
36073754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 544
Target Start/End: Original strand, 36074784 - 36074839
Alignment:
| Q |
489 |
aaatatatataatttattgttccagttaggaatactgcatgagaaattcttgattg |
544 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
36074784 |
aaatatatataattgattgttctagttaagaatactgcatgagaaattcttgattg |
36074839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 26531154 - 26531087
Alignment:
| Q |
298 |
ttagatcagtgatcataaggttccaataagcttttgaaaacgtgtaaggaaatattaaaagacatgcg |
365 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
26531154 |
ttagatcagttattatagggttccaataagcttttaaaaacatgtaaggaaatattaaaagacatgcg |
26531087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 26531295 - 26531218
Alignment:
| Q |
187 |
aagatcaacgttcatcacctcaaaaaa-tgaataatcaaagttcatagattatttccatatgcctacgattattttta |
263 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | ||||||||| ||||| |
|
|
| T |
26531295 |
aagatcaacgttcatcacctcaaaaaaattaataatcgaagttcatagattgtttccataagtctacgattactttta |
26531218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 26530996 - 26530905
Alignment:
| Q |
452 |
caatatatcaaaagatcggtgcaat--gtaacaacttagaaatatatataatttat-tgttccagttaggaatactgcatgagaaattcttg |
540 |
Q |
| |
|
|||||| | ||||||| |||||||| |||| |||||||||||||| |||||| | ||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
26530996 |
caatattttaaaagataggtgcaatatgtaataacttagaaatatacataattattctgttctagtttggaatactgtatgagaaattcttg |
26530905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University