View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_9 (Length: 414)
Name: NF4644_low_9
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 41391386 - 41391811
Alignment:
| Q |
10 |
aacctgtggtgacttgcctagttgtttaatttaatatatgaatgaactcttatttctgaattttccatttcttttttcaattttacaaagtctctgcatt |
109 |
Q |
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| T |
41391386 |
aacctgtggtgacttgcctagttgtttaatttaatatatgaatgaactcttatttctgaattttccatttcttttttcaattttacaaagtctctgcatg |
41391485 |
T |
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| Q |
110 |
ttgtgaatactataatccaattattctttttgctactgcaaaagagtaaacgagcaca---atgaattcggattccgtgcatgcagttccggcattcaca |
206 |
Q |
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| T |
41391486 |
ttgtgaatactataatccaattattctttttgctactgcaaaagagtaaatgagcacagcaatgaattcggattccgtgcatgcagttccggcattcaca |
41391585 |
T |
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| Q |
207 |
cagtcaatcatacaagtagtctttgtattgagattggatgatgcagacttcaaacatatttagttgtttttaaaaactaaaaagcctagtttaaaatatg |
306 |
Q |
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| T |
41391586 |
cagtcaatcatacaagtagtctttgtattgagattggatgatgcagacttcaaacatatttggttgtttttaaaaactaaaaagcctagtttaaaatatg |
41391685 |
T |
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| Q |
307 |
cacaatctaatctcgattcaacgatcaccaatgtggtt------------------aacctacgaccacaaggaattcgaattcgtaagtgaatctgaat |
388 |
Q |
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| T |
41391686 |
cacaatctaatctcgattcaacgatcaccaatgtggttaaccatgtgaatgtgggaaacctacgaccacaaggaattcgaattcgtaagcgaatctgaat |
41391785 |
T |
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| Q |
389 |
ttcagaacaaaagagaaaatatgtat |
414 |
Q |
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| T |
41391786 |
ttcagaacaaaagaggaaatatgtat |
41391811 |
T |
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