View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645-Insertion-2 (Length: 616)

Name: NF4645-Insertion-2
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645-Insertion-2
NF4645-Insertion-2
[»] chr5 (2 HSPs)
chr5 (32-452)||(22766524-22766948)
chr5 (509-616)||(22766360-22766467)
[»] chr4 (10 HSPs)
chr4 (509-609)||(7317539-7317639)
chr4 (509-616)||(7243930-7244037)
chr4 (509-616)||(7324321-7324428)
chr4 (299-435)||(7243693-7243829)
chr4 (528-616)||(7218443-7218531)
chr4 (287-420)||(7317755-7317888)
chr4 (299-419)||(8161924-8162044)
chr4 (300-419)||(7324538-7324657)
chr4 (314-419)||(7218225-7218330)
chr4 (528-612)||(8162158-8162243)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 32 - 452
Target Start/End: Complemental strand, 22766948 - 22766524
Alignment:
Q  32 cctataaataaatgtgtttacttctcttcatggatcacttgcgttaactcactcattgttgcagtcacaaaaccctaaaccctaatttcatcagaatcac 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  22766948 cctataaataaatgtgcttacttctcttcatggatcacttgcgttcactcactcattgttgcagccacaaaaccctaaaccataatttcatcagaatcac 22766849  T
Q  132 tttctttcttgttgaagattttttgctaggttgcttggttcttcgaccaattgactgacacaaattcttctacccttttatagtcagaagac-----aaa 226  Q
    |||||||||||||||||| || ||| |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |     | |    
T  22766848 tttctttcttgttgaagaattgttgttaggttg----gttcttcgaccaattgactgacacaaattcttctacccttttatagtcagaactccgaagaca 22766753  T
Q  227 caactgttgttgtctccaactttgtttctttcttgtgttt---cacacaaaaactgttactagttgtgatggccgttttcattgacaacccatcattccc 323  Q
    |||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  22766752 caactgttattgtctccaactttgtttctttcttgtgttttttcacacaaaaactgttactagttgtaatggccgttttcatcgacaacccatcattccc 22766653  T
Q  324 taatggtctcaacgttattgcaattgatcatgataccactttccttaacaccattgaagagatgtgtaatcgatgccattatcaaggttagttacttggt 423  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  22766652 tgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgtgtaatcgatgtcattatcaaggttagttacttggt 22766553  T
Q  424 aaattacaccttgttcctcaattcaagag 452  Q
    |||||||||||| ||| ||||||| ||||    
T  22766552 aaattacaccttattcatcaattctagag 22766524  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 509 - 616
Target Start/End: Complemental strand, 22766467 - 22766360
Alignment:
Q  509 agttactaaatgcaatacagcttctgatgccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggat 608  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22766467 agttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggat 22766368  T
Q  609 gcctatga 616  Q
    ||||||||    
T  22766367 gcctatga 22766360  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 509 - 609
Target Start/End: Complemental strand, 7317639 - 7317539
Alignment:
Q  509 agttactaaatgcaatacagcttctgatgccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggat 608  Q
    |||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7317639 agttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgccaaacatggat 7317540  T
Q  609 g 609  Q
    |    
T  7317539 g 7317539  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 509 - 616
Target Start/End: Original strand, 7243930 - 7244037
Alignment:
Q  509 agttactaaatgcaatacagcttctgatgccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggat 608  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  7243930 agttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggat 7244029  T
Q  609 gcctatga 616  Q
    || |||||    
T  7244030 gcttatga 7244037  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 509 - 616
Target Start/End: Complemental strand, 7324428 - 7324321
Alignment:
Q  509 agttactaaatgcaatacagcttctgatgccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggat 608  Q
    |||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||    
T  7324428 agttaccaaatgcaattcagcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgccgaacatggat 7324329  T
Q  609 gcctatga 616  Q
    | ||||||    
T  7324328 gtctatga 7324321  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 299 - 435
Target Start/End: Original strand, 7243693 - 7243829
Alignment:
Q  299 ttttcattgacaacccatcattccctaatggtctcaacgttattgcaattgatcatgataccactttccttaacaccattgaagagatgtgtaatcgatg 398  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||| | |||| | |||||||| ||||| || |||||||||||||     
T  7243693 ttttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattgaggatatgtgtaatcgatt 7243792  T
Q  399 ccattatcaaggttagttacttggtaaattacacctt 435  Q
    ||||||||||||||||| |||| || |||| ||||||    
T  7243793 ccattatcaaggttagtcactttgttaattgcacctt 7243829  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 528 - 616
Target Start/End: Original strand, 7218443 - 7218531
Alignment:
Q  528 gcttctgatgccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggatgcctatga 616  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||    
T  7218443 gcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatga 7218531  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 287 - 420
Target Start/End: Complemental strand, 7317888 - 7317755
Alignment:
Q  287 ttgtgatggccgttttcattgacaacccatcattccctaatggtctcaacgttattgcaattgatcatgataccactttccttaacaccattgaagagat 386  Q
    |||| ||||| ||||||| ||||||||||||||||||    |||||||| |||||||||||||||||||| | ||||||||| ||| | ||||| |||||    
T  7317888 ttgtaatggcggttttcactgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctattgaggagat 7317789  T
Q  387 gtgtaatcgatgccattatcaaggttagttactt 420  Q
    |||||||||||  ||||| ||||||| |||||||    
T  7317788 gtgtaatcgatatcattaccaaggtttgttactt 7317755  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 8161924 - 8162044
Alignment:
Q  299 ttttcattgacaacccatcattccctaatggtctcaacgttattgcaattgatcatgataccactttccttaacaccattgaagagatgtgtaatcgatg 398  Q
    ||||||||||||| |||||||||||  | |||||| | ||  |||||||||||||||| | |||| |||||||  |||| || |||||||||||||||||    
T  8161924 ttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgtaatcgatg 8162023  T
Q  399 ccattatcaaggttagttact 419  Q
    | |||||||||||||| ||||    
T  8162024 caattatcaaggttaggtact 8162044  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 7324657 - 7324538
Alignment:
Q  300 tttcattgacaacccatcattccctaatggtctcaacgttattgcaattgatcatgataccactttccttaacaccattgaagagatgtgtaatcgatgc 399  Q
    |||| ||||||||||||||||||||  |||||| |  |||||||| ||||||||||| | || | | |||||||| ||||| || |||||||||||||      
T  7324657 tttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatat 7324558  T
Q  400 cattatcaaggttagttact 419  Q
    ||||||||||||||||||||    
T  7324557 cattatcaaggttagttact 7324538  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 419
Target Start/End: Original strand, 7218225 - 7218330
Alignment:
Q  314 catcattccctaatggtctcaacgttattgcaattgatcatgataccactttccttaacaccattgaagagatgtgtaatcgatgccattatcaaggtta 413  Q
    ||||||||||  | |||||||| ||| |||||||||||||||| | |||| |||| ||  |||| || |||||||||||||||||| ||||| | |||||    
T  7218225 catcattcccagaaggtctcaaggttcttgcaattgatcatgacatcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggtta 7218324  T
Q  414 gttact 419  Q
    ||||||    
T  7218325 gttact 7218330  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 612
Target Start/End: Original strand, 8162158 - 8162243
Alignment:
Q  528 gcttctgatgccttgaacttgttgga-aagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggatgcct 612  Q
    ||||||||||| ||| | |||||||| || ||||  |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  8162158 gcttctgatgcattggatttgttggacaaaaaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcct 8162243  T

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