View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645-Insertion-4 (Length: 563)
Name: NF4645-Insertion-4
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645-Insertion-4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 7 - 563
Target Start/End: Complemental strand, 7140966 - 7140410
Alignment:
| Q |
7 |
agtttcatcgaaggaaacaaatcgataagctcaagtccacttgaaaccgctaccgcttttctaatcaacgacacaaattcttcttgatcctcagatttat |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140966 |
agtttcattgaaggaaacaaatcgataagctcaagtccacttgaaaccgccaccgcttttctaatcaacgacacaaattcttcttgatcctcagatttat |
7140867 |
T |
|
| Q |
107 |
cacccaacgccgctctcaaaataatagaatttatcactgaaaaaattctagtagtgaggttgatttttgagcctgcaaatgacttaattgattcaataaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140866 |
cacccaacgccgctctcaaaataatagaatttatcactgaaaaaattctagtagtgaggttgatttttgagcctgcaaatgacttaattgattcaataaa |
7140767 |
T |
|
| Q |
207 |
cttttttgtctcatcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140766 |
cttttttgtctcatcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatca |
7140667 |
T |
|
| Q |
307 |
ccatatggagaaaatacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcatta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140666 |
ccatatggagaaaatacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcatta |
7140567 |
T |
|
| Q |
407 |
cttccttggctaaatttgaggaagaaacaaccactgcattaatttcacctagttttaggtgcattaaaggtccatatttttgagaaagtttttggagacc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| || || |
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| T |
7140566 |
cttccttggctaaatttgaggaagaaacaaccactgcattaatttcacctagttgtaggtgcattaatggtccatatttttgagaaagtttttgaagccc |
7140467 |
T |
|
| Q |
507 |
atgatgtggaagttttcctgcaaatgctagttgatgtaagttaccaatgagaggtaa |
563 |
Q |
| |
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| T |
7140466 |
atgatgtggaagttttcctgcaaatgctagttgatgtaagttaccaatgagaggtaa |
7140410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 148 - 522
Target Start/End: Complemental strand, 7152656 - 7152282
Alignment:
| Q |
148 |
aaaattctagtagtgaggttgatttttgagcctgcaaatgacttaattgattcaataaacttttttgtctcatcttctctaatgtaagaaaaagattgaa |
247 |
Q |
| |
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||||||||| ||||||| |||||| ||||||||| |||| | ||| |||| || || |||||||| |||||||||||||| |||||||||||||||| |
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| T |
7152656 |
aaaattctactagtgagattgattgttgagcctgttgatgattgaatggattgtatcaatttttttgtttcatcttctctaatataagaaaaagattgaa |
7152557 |
T |
|
| Q |
248 |
cccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggagaaaatacaatatctttaaaaccataggctaa |
347 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
7152556 |
cccttttagcacttagaagttcaaagacacatatttttctcatttgtctccaaaaatcaccatatggagaaaatacaatatcttttgaaccataggccat |
7152457 |
T |
|
| Q |
348 |
aattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaaatttgaggaagaaacaaccactgcatta |
447 |
Q |
| |
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||||| | | ||| ||||||||||||||||||||||| || |||||||||||||||||| |||||| || || || | || || |||| ||| | | | |
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| T |
7152456 |
aatttcaggggaaagaagttttggcctattagcaaaagcagcatcatgtgttttcattatttcctttgccaatttaggagatgatacaatcacagtagaa |
7152357 |
T |
|
| Q |
448 |
atttcacctagttttaggtgcattaaaggtccatatttttgagaaagtttttggagaccatgatgtggaagtttt |
522 |
Q |
| |
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|||||||| |||| || ||||||||||||||||||||| |||||||||| || ||| ||||||||||| ||||| |
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| T |
7152356 |
atttcaccaagttgtatgtgcattaaaggtccatatttatgagaaagttcatgtagagcatgatgtggacgtttt |
7152282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 185 - 496
Target Start/End: Complemental strand, 7130425 - 7130114
Alignment:
| Q |
185 |
atgacttaattgattcaataaacttttttgtctcatcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttt |
284 |
Q |
| |
|
|||||| |||||||| ||||| ||| | ||||||||||||||||| ||||| || |||||||| |||||| ||||| || |||||| | ||||||||| |
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| T |
7130425 |
atgactgaattgattttataaaatttctcgtctcatcttctctaatataagagaatgattgaactcttttattacttaaaagctctaacatacatatttt |
7130326 |
T |
|
| Q |
285 |
tctcatttgtctccaataatcaccatatggagaaaatacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaa |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | | ||| | | || |||| | |||||||||||||||| |
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| T |
7130325 |
tctcatttgtctccaataatcaccatatggagaaaatgcaatatcttttgaaccataagtcataatatgagaagcttgaaggtgtggcctattagcaaaa |
7130226 |
T |
|
| Q |
385 |
acaacatcatgtgttttcattacttccttggctaaatttgaggaagaaacaaccactgcattaatttcacctagttttaggtgcattaaaggtccatatt |
484 |
Q |
| |
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| ||||||||| ||||||| || ||| || ||||| |||| || || | ||| || ||| | ||||||| ||||||||||| | | ||||||||||| |
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| T |
7130225 |
ataacatcatgggttttcaatatttcttttgctaactttggcgaggatataactacagcagaagtttcaccaagttttaggtggacaataggtccatatt |
7130126 |
T |
|
| Q |
485 |
tttgagaaagtt |
496 |
Q |
| |
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| |||| ||||| |
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| T |
7130125 |
tatgagcaagtt |
7130114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 31185532 - 31185565
Alignment:
| Q |
454 |
cctagttttaggtgcattaaaggtccatattttt |
487 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
31185532 |
cctagttttaggtgcattaagggtccatattttt |
31185565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 12426527 - 12426641
Alignment:
| Q |
218 |
catcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggaga |
317 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||| |||| ||| | ||||||||||||||| |||||||||||||||||||||| || |
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| T |
12426527 |
catcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtctccaataatcaccatatgaagc |
12426626 |
T |
|
| Q |
318 |
aaatacaatatcttt |
332 |
Q |
| |
|
||| | ||||||||| |
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| T |
12426627 |
aaagataatatcttt |
12426641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 12266293 - 12266198
Alignment:
| Q |
218 |
catcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatg |
313 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||| |||| ||| | ||||||||||||||| |||||||||||||||||||||| |
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| T |
12266293 |
catcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtctccaataatcaccatatg |
12266198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 12426816 - 12426857
Alignment:
| Q |
507 |
atgatgtggaagttttcctgcaaatgctagttgatgtaagtt |
548 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
12426816 |
atggtgtggaagttttcctgctaatgctagttgatgcaagtt |
12426857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 216 - 489
Target Start/End: Original strand, 55959639 - 55959917
Alignment:
| Q |
216 |
ctcatcttctctaatgtaagaaaaagattgaacccttttagcac-----ttagaatctctaagacacatatttttctcatttgtctccaataatcaccat |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| | |||| ||| | ||||||||| ||||||||||||||||||||||| | |
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| T |
55959639 |
ctcatcttctctaatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctcatttgtctccaataatcaccgt |
55959738 |
T |
|
| Q |
311 |
atggagaaaatacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttc |
410 |
Q |
| |
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|||||| ||| |||||| | | || |||||||||| || ||| ||| | ||||||||||| | | ||||| ||| |||| |||| |||| || || |
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| T |
55959739 |
atggagcaaagacaataccagttgaatcataggctaatatattaggagcaatgagttttggcctttgaacaaaagcaagatcacgtgtcttcaatatctc |
55959838 |
T |
|
| Q |
411 |
cttggctaaatttgaggaagaaacaaccactgcattaatttcacctagttttaggtgcattaaaggtccatatttttga |
489 |
Q |
| |
|
|||||||||| | ||| || ||||| | || | |||||||||||| | || ||||| | |||||||||||||||| |
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|
| T |
55959839 |
tttggctaaatcaggggatgagacaactattgtagaaatttcacctagctgaagatgcataagaggtccatatttttga |
55959917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 548
Target Start/End: Original strand, 55956199 - 55956527
Alignment:
| Q |
220 |
tcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggagaaa |
319 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||| |||| || | | ||||||||| ||||| ||||||||||||||||| ||||||| | |
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| T |
55956199 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
55956298 |
T |
|
| Q |
320 |
atacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaa |
419 |
Q |
| |
|
| ||||||||| | || |||| | ||| |||||| ||| | |||| |||||| | | ||||| || ||||||||| ||||||| || ||||| || |
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| T |
55956299 |
aaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaa |
55956398 |
T |
|
| Q |
420 |
atttgaggaagaaacaaccactgcattaatttcacctagttttaggtgcattaaaggtccatatttttgagaaagtttttggagaccatgatgtggaagt |
519 |
Q |
| |
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|| | || ||||||||||||||| ||||||||| || | || | ||| | |||||||||||| | || || | | | ||| ||||||||||||| |
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| T |
55956399 |
atcaggagatgaaacaaccactgcagaaatttcaccaagctgaagatacataagaggtccatatttgttggatagatctcgaagagtatgatgtggaagt |
55956498 |
T |
|
| Q |
520 |
tttcctgcaaatgctagttgatgtaagtt |
548 |
Q |
| |
|
|||| | |||||||||||||| ||||| |
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|
| T |
55956499 |
gatcctcctaatgctagttgatgcaagtt |
55956527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 8952578 - 8952526
Alignment:
| Q |
274 |
acacatatttttctcatttgtctccaataatcaccatatggagaaaatacaat |
326 |
Q |
| |
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||||| |||||||| |||| ||||||| ||||||||||||||| ||| ||||| |
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| T |
8952578 |
acacaaatttttcttatttctctccaaaaatcaccatatggagcaaaaacaat |
8952526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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