View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645-Insertion-5 (Length: 444)

Name: NF4645-Insertion-5
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645-Insertion-5
NF4645-Insertion-5
[»] chr1 (2 HSPs)
chr1 (8-444)||(8790662-8791100)
chr1 (402-444)||(8784586-8784628)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 8791100 - 8790662
Alignment:
Q  8 ttaatgtcattttatttttgcatctttgagacttaacctttattctttcttaacggtgatatttggctgcttgctttgctacttaaacacgcacaaacat 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  8791100 ttaatgtcattttatttttgcatccttgagacttaacctttattctttcttaacggtgatatttggttgctcgctttgctacttaaacacgcacaaacat 8791001  T
Q  108 agagacccaacgatacaatcaagtcatccaattcaatgcgattcaatcatgtgtttccataagtgactcaatagttcaacaagtaacctgataccctcac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8791000 agagacccaacgatacaatcaagtcatccaattcaatgcgattcaatcatgtgtttccataagtgactcaatagttcaacaagtaacctgataccctcac 8790901  T
Q  208 tagaacaatcaccgagttggttgttaaaagactattatcgtacttaaaacattcctggttagttaattgtacatgaacattgttgcaagtgcagattaag 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8790900 tagaacgatcaccgagttggttgttaaaagactattatcgtacttaaaacattcctggttagttaattgtacatgaacattgttgcaagtgcagattaag 8790801  T
Q  308 aaaggattgcctcctaagtctatagttcagtgatcagtttaattgtacataaacattgttgcatgtgc--attaaaaaaggattgcctcctaagtcctaa 405  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  8790800 aaaggattgcctcctaaatctatagttcagtgattagtttaattgtacataaacattgttgcatgtgcagattaaaaaaggattgcctcctaagtcctaa 8790701  T
Q  406 tcctagatataagagattccaattttacagttttcgcat 444  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8790700 tcctagatataagagattccaattttacagttttcgcat 8790662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 8784628 - 8784586
Alignment:
Q  402 ctaatcctagatataagagattccaattttacagttttcgcat 444  Q
    |||||||||||||||||||||| |||||||| | |||||||||    
T  8784628 ctaatcctagatataagagatttcaattttaaatttttcgcat 8784586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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