View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645-Insertion-6 (Length: 353)
Name: NF4645-Insertion-6
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 7623897 - 7623691
Alignment:
| Q |
12 |
ggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcaggttagttagttaattaatat |
111 |
Q |
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| T |
7623897 |
ggtggcgaatgctccgaaaaatctcctccgttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcaggttagtta----attaatat |
7623802 |
T |
|
| Q |
112 |
cattttctcaatttcaacataagttgcactatcaatgtcatttatacgagagtcacatcattttgtaacctgaaaattaatactcattcgaattttatat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
7623801 |
cattttctcaatttcaacataagttgcactatcaatgtcatttatacgagagtcacatcattttgtaacctgaaaattaatactcatttgaattttatct |
7623702 |
T |
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| Q |
212 |
aagagaataaa |
222 |
Q |
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||||||||||| |
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| T |
7623701 |
aagagaataaa |
7623691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 220 - 353
Target Start/End: Complemental strand, 7623530 - 7623397
Alignment:
| Q |
220 |
aaaaatcttcccagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623530 |
aaaaatcttccgagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
7623431 |
T |
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| Q |
320 |
agtcatgaacaagttttggttatattgacttgag |
353 |
Q |
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| T |
7623430 |
agtcatgaacaagttttgcttatattgacttgag |
7623397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 7659787 - 7659908
Alignment:
| Q |
11 |
cggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcaggttagttagttaattaata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659787 |
cggtggcgaatgctccgaaaaatctcctcagttcatctcttctcaaacaaagtcatggaagaattcaaacacttgcgtcaggttagttagttaattaata |
7659886 |
T |
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| Q |
111 |
tcattttctcaatttcaacata |
132 |
Q |
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|||||||||||||||||||||| |
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| T |
7659887 |
tcattttctcaatttcaacata |
7659908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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