View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_high_16 (Length: 276)
Name: NF4645_high_16
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 38181322 - 38181568
Alignment:
| Q |
19 |
gtggtgaccctgtttgtctaaacagatgtctacaataatgtaactggaatcctgcattctaataaaacagctatattaattagcattttaattatattct |
118 |
Q |
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| T |
38181322 |
gtggtgaccctgtttgtctaaacagatgtctaaaataatgtaactggaatcctacattctaataaaacagctatattaattagcattttaattatattct |
38181421 |
T |
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| Q |
119 |
atctatattcgtagaacttttatctttatcaacatatatatctctttatctgttcatgtatgtcctaattgctttctcccatgaagtttgcaacccaatt |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181422 |
atctatatttgtagaacttttatctttatcaacatatatatctctttatctgttcatgtatgtcctaattgctttctcccatgaagtttgcaacccaatt |
38181521 |
T |
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| Q |
219 |
acatgttagataacactgtattttcatataaaacaataacagctcat |
265 |
Q |
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| T |
38181522 |
acatgttagataacactgtattttcatataaaacaataacagctcat |
38181568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 20951751 - 20951831
Alignment:
| Q |
42 |
agatgtctacaataatgtaactggaatcctgcattctaataaaacagctatattaattagcattttaattatattctatct |
122 |
Q |
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||||||| |||||||| ||| | |||| | |||||||||||||||| ||||||||||||||||||| || |||||||||| |
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| T |
20951751 |
agatgtcaacaataatataatttgaattccacattctaataaaacagatatattaattagcattttatttttattctatct |
20951831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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