View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_high_17 (Length: 276)
Name: NF4645_high_17
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 40985011 - 40985251
Alignment:
| Q |
16 |
agatgaataatttgagaaggttgaggaggttgtaaagagaaatgattaataacgttaggggatgttccttcttctcttactctcttgcgagaattggtac |
115 |
Q |
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| T |
40985011 |
agatgaataatttgagaaggttgaggaggttgtaaagagaaatgattaataacgttaggggatgttc---cttctcttactctcttgcgagaattggtac |
40985107 |
T |
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| Q |
116 |
ctgcggtgagttgagacatcaagaa-gaa-------tgaa-aagagatgtatgtttttaattgtgaaacaaagaaacaaacaaacatacttgtgttgttg |
206 |
Q |
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| T |
40985108 |
ctgcgatgagttgagacatgatgaatgaattatttgtgaaggagagatgtatgtttttaattgtgaaaca-------aaacaaacatacttgtgttgttg |
40985200 |
T |
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| Q |
207 |
cataggatattatgagaatgatgagtttgatcaagaagtgatagtcctaat |
257 |
Q |
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| T |
40985201 |
cataggatattatgagaatgatgagtttgatcaagaagtgatagtcctaat |
40985251 |
T |
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