View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_high_2 (Length: 609)
Name: NF4645_high_2
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 10 - 592
Target Start/End: Complemental strand, 35806009 - 35805428
Alignment:
| Q |
10 |
catcatcaacaccacaaccaaaactccgtcataatccattttattnnnnnnnnnnnntactttagccacaaaacaatcgcaaccccacaaaatcacacca |
109 |
Q |
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| T |
35806009 |
catcatcaacaccacaaccaaaactccgtcatagtccatttgattgaaaaaaaaaa-tactttagccacaaaacaatcgacacccaacaaaatcatacca |
35805911 |
T |
|
| Q |
110 |
ccaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggctagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805910 |
ccaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggctagt |
35805811 |
T |
|
| Q |
210 |
tagaattgaagttaaacaacaccacttgctggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgagatat |
309 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805810 |
tagaattgaagtgaaacaacaccacttgttggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgagatat |
35805711 |
T |
|
| Q |
310 |
atgtactattcaccaccaccggtgcttacataattcccccaccactgccaccgtggacccttggcttccaccctcaatttcatcatttagggttttgatc |
409 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805710 |
atgtacgattcaccaccaccggtgcttacataattcccccaccactgccaccgtggacccttggcttccaccctcaatttcatcatttagggttttgatc |
35805611 |
T |
|
| Q |
410 |
taactatctgcaaagggaatcgatccatattagtattatgatagaattgacaaagttatttgatgtaacttaatgaatgatttggagaaaattgaaacaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805610 |
taactatctgcaaagggaatcgatccatattagtattatgatagaattgacaaagttatttgatgtaacttaatgaatgatttggagaaaattgaaacaa |
35805511 |
T |
|
| Q |
510 |
tattcgggtgtagtgcaaggaaaaacaaaagagaagcttaaaattaatatgatataatgcatgtttgaggtatctagtgaaat |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35805510 |
tattcgggtgtagtgcaaggaaaaacaaaagagaagctaaaaattaatatgatataatgcatgtttgaggcatctagtgaaat |
35805428 |
T |
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