View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_high_35 (Length: 211)
Name: NF4645_high_35
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 52760732 - 52760919
Alignment:
| Q |
12 |
agcagagactaaactagagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaa |
111 |
Q |
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| T |
52760732 |
agcagagactaaactagagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaa |
52760831 |
T |
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| Q |
112 |
acaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtg |
199 |
Q |
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| T |
52760832 |
acaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtg |
52760919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 52796987 - 52796891
Alignment:
| Q |
104 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtga |
200 |
Q |
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| T |
52796987 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggacttggtga |
52796891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 52798882 - 52798787
Alignment:
| Q |
99 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggact |
194 |
Q |
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| T |
52798882 |
aacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatgtttaggact |
52798787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 38710644 - 38710731
Alignment:
| Q |
99 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatga |
186 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||| |||||| |||||| |
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| T |
38710644 |
aacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
38710731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 42094276 - 42094344
Alignment:
| Q |
99 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaa |
167 |
Q |
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| T |
42094276 |
aacattctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaa |
42094344 |
T |
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