View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_high_4 (Length: 494)

Name: NF4645_high_4
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_high_4
NF4645_high_4
[»] chr6 (4 HSPs)
chr6 (153-478)||(14742725-14743047)
chr6 (19-158)||(14736945-14737084)
chr6 (112-144)||(18179112-18179144)
chr6 (112-144)||(18318140-18318172)
[»] scaffold0665 (1 HSPs)
scaffold0665 (19-158)||(8274-8413)
[»] scaffold0104 (2 HSPs)
scaffold0104 (112-144)||(15343-15375)
scaffold0104 (112-144)||(17363-17395)
[»] chr5 (2 HSPs)
chr5 (107-143)||(21229809-21229845)
chr5 (112-144)||(21556564-21556596)
[»] chr8 (2 HSPs)
chr8 (285-415)||(16098550-16098680)
chr8 (112-144)||(41682981-41683013)
[»] chr7 (2 HSPs)
chr7 (110-144)||(11085917-11085951)
chr7 (112-144)||(6374419-6374451)
[»] scaffold0577 (1 HSPs)
scaffold0577 (112-144)||(9471-9503)
[»] scaffold0555 (1 HSPs)
scaffold0555 (112-144)||(8243-8275)
[»] scaffold0317 (1 HSPs)
scaffold0317 (112-144)||(5892-5924)
[»] scaffold0306 (1 HSPs)
scaffold0306 (112-144)||(10295-10327)
[»] scaffold0241 (1 HSPs)
scaffold0241 (112-144)||(3835-3867)
[»] scaffold0230 (1 HSPs)
scaffold0230 (112-144)||(22297-22329)
[»] scaffold0003 (1 HSPs)
scaffold0003 (112-144)||(159715-159747)
[»] chr4 (2 HSPs)
chr4 (112-144)||(15368914-15368946)
chr4 (112-144)||(15374712-15374744)
[»] chr3 (1 HSPs)
chr3 (316-379)||(293670-293734)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 153 - 478
Target Start/End: Original strand, 14742725 - 14743047
Alignment:
Q  153 atcccgcttacttgtttcaccatgttttatttgataacgtagattgtacacgtttaagacggagggcattttggtacttgcacgcagagggtatataagt 252  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14742725 atcccgcttacctgtttcacgatgttttatttgataacgtagattgtacacgtttaagatggagggcattttggtacttgcacgcagagggtatataagt 14742824  T
Q  253 gtttcttgtcccaaataagccactttcatttgtactttctctctctaagctgcaaaattcagatttcctctcactctctctctagtgtttcgatccctcc 352  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742825 gtttcttgtcccaaataagccactttcaattgtactttctctctctaagttgcaaaattcagatttcctctcactctctctctagtgtttcgatccctcc 14742924  T
Q  353 ttcctctctccacttaatcttcccaaagttatatttctagaaggattatggttaaaggatggattccacatgatgcatgcagccagatttagcttgggtc 452  Q
    ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||    
T  14742925 ttcatctctccactcaatcttcccaaagttctatttctagaaggattatggttaaaggatggattccacatgatgca---agccagctttagcttgggtc 14743021  T
Q  453 aagctttattcacgttgaatcttcat 478  Q
    |||||||||| |||||||||||||||    
T  14743022 aagctttatttacgttgaatcttcat 14743047  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 14736945 - 14737084
Alignment:
Q  19 aaggttaaccggaagaattcacctgacaatgatatatgggagctaaagacaaagacgttaagtattaatcgcagttgttttaaggtgattctaaatttcg 118  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  14736945 aaggttagccggaagaattcacctgataatgatatatgggagctagagacaaagacgttaagtattaaccgcagttgttttaaagtgattctaaatttcg 14737044  T
Q  119 aggacgaagttcttttaagggggtaggatgtaatatcccg 158  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  14737045 aggacgaagttcttataaaggggtaggatgtaatatcccg 14737084  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 18179144 - 18179112
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  18179144 aatttcgaggacgaaattcttttaagggggtag 18179112  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 18318172 - 18318140
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  18318172 aatttcgaggacgaaattcttttaagggggtag 18318140  T

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Target: scaffold0665 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 8413 - 8274
Alignment:
Q  19 aaggttaaccggaagaattcacctgacaatgatatatgggagctaaagacaaagacgttaagtattaatcgcagttgttttaaggtgattctaaatttcg 118  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  8413 aaggttagccggaagaattcacctgataatgatatatgggagctagagacaaagacgttaagtattaaccgcagttgttttaaagtgattctaaatttcg 8314  T
Q  119 aggacgaagttcttttaagggggtaggatgtaatatcccg 158  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  8313 aggacgaagttcttataaaggggtaggatgtaatatcccg 8274  T

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Target: scaffold0104 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 15375 - 15343
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    |||||||||||||||||||||||||||||||||    
T  15375 aatttcgaggacgaagttcttttaagggggtag 15343  T

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Target: scaffold0104; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 17395 - 17363
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    |||||||||||||||||||||||||||||||||    
T  17395 aatttcgaggacgaagttcttttaagggggtag 17363  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 21229809 - 21229845
Alignment:
Q  107 ttctaaatttcgaggacgaagttcttttaagggggta 143  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21229809 ttctaaatttcgaggacgaaattcttttaagggggta 21229845  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 21556564 - 21556596
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  21556564 aatttcgaggacgaaattcttttaagggggtag 21556596  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 415
Target Start/End: Complemental strand, 16098680 - 16098550
Alignment:
Q  285 tactttctctctctaagctgcaaaattcagatttc-ctctcactctctctctagtgtttcgatccctccttcctctctccacttaatcttcccaaagtta 383  Q
    |||||||||||||||||||   ||| ||||||||  ||||| ||||||||||||  || ||| ||||||| ||||||| |||| ||||||| |||||||     
T  16098680 tactttctctctctaagctctcaaactcagattttgctctccctctctctctagacttgcga-ccctcctccctctcttcactcaatcttctcaaagttc 16098582  T
Q  384 tatttctagaaggattatggttaaaggatgga 415  Q
    |||| |||  | |||| | | |||||||||||    
T  16098581 tattcctaacaagattgtagctaaaggatgga 16098550  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 41682981 - 41683013
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  41682981 aatttcgaggacgaaattcttttaagggggtag 41683013  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 11085951 - 11085917
Alignment:
Q  110 taaatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||||| |||||||||||||||||    
T  11085951 taaatttcgaggacgaaattcttttaagggggtag 11085917  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 6374419 - 6374451
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  6374419 aatttcgaggacgaaattcttttaagggggtag 6374451  T

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Target: scaffold0577 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 9503 - 9471
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  9503 aatttcgaggacgaaattcttttaagggggtag 9471  T

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Target: scaffold0555 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 8243 - 8275
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  8243 aatttcgaggacgaaattcttttaagggggtag 8275  T

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Target: scaffold0317 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 5892 - 5924
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  5892 aatttcgaggacgaaattcttttaagggggtag 5924  T

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Target: scaffold0306 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 10295 - 10327
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  10295 aatttcgaggacgaaattcttttaagggggtag 10327  T

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Target: scaffold0241 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 3867 - 3835
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  3867 aatttcgaggacgaaattcttttaagggggtag 3835  T

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Target: scaffold0230 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 22297 - 22329
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  22297 aatttcgaggacgaaattcttttaagggggtag 22329  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 159715 - 159747
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  159715 aatttcgaggacgaaattcttttaagggggtag 159747  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 15368946 - 15368914
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  15368946 aatttcgaggacgaaattcttttaagggggtag 15368914  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 15374744 - 15374712
Alignment:
Q  112 aatttcgaggacgaagttcttttaagggggtag 144  Q
    ||||||||||||||| |||||||||||||||||    
T  15374744 aatttcgaggacgaaattcttttaagggggtag 15374712  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 293734 - 293670
Alignment:
Q  316 tttcctctcactctctctctagtgtttcgatccctcct-tcctctctccacttaatcttcccaaa 379  Q
    ||||||||| ||||||||||||  ||||||||| || | ||||  ||||||||||||||||||||    
T  293734 tttcctctccctctctctctaggatttcgatccttcttctcctacctccacttaatcttcccaaa 293670  T

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