View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_11 (Length: 341)
Name: NF4645_low_11
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_11 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 31110486 - 31110678
Alignment:
| Q |
18 |
agtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31110486 |
agtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctat |
31110585 |
T |
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| Q |
118 |
aaaataagggtgtatatcagatattaatacatataacaactgggacccaaattcaatttgttgttgtctcccaaaatttgactattttataac |
210 |
Q |
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| T |
31110586 |
aaaataagggtgtatatcagatattaatacatataacaactaggacccaaattcaaattgttgttgtcccccaaaatttgactattttataac |
31110678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 31110860 - 31110959
Alignment:
| Q |
202 |
ttttataacatgtcattgttgtggttgtttgttgttgggctttacaagtgattgcattttataaatgccttgtattgtaagatacaacaacagttacaat |
301 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31110860 |
ttttataacatgtcattgttgtggttgtt----gttgggctttacaagtgattgcatttt-taaatgccttgtattgtaagatacaacaacagttacaat |
31110954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 31080598 - 31080714
Alignment:
| Q |
18 |
agtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctat |
117 |
Q |
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||||||||||| |||||| ||||||||||||| ||||||||| || ||||||| |||||||| ||||||||||||||||||| | ||| |||||||||| |
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| T |
31080598 |
agtttagacttaaaactttggttttctcttcaaacatgtagtataccacaacaagtcccacatagagtatgtgttaaaacatgcacgaaggtttacctat |
31080697 |
T |
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| Q |
118 |
aaaataagggtgtatat |
134 |
Q |
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|||||||| |||||||| |
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| T |
31080698 |
aaaataagagtgtatat |
31080714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 31035473 - 31035590
Alignment:
| Q |
19 |
gtttagacttgaaacttcggttttctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctata |
118 |
Q |
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||||| ||||||||||| ||||||||||||| ||||||||| || ||||||| | |||||||||||||||||||||||| ||||| |||| |||||| |
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| T |
31035473 |
gtttaaacttgaaacttaggttttctcttcaaacatgtagtataccacaacaagttccacatcgagtatgtgttaaaacagtcatgaaggttttcctata |
31035572 |
T |
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| Q |
119 |
aaataagggtgtatatca |
136 |
Q |
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||| ||| |||||||||| |
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| T |
31035573 |
aaagaagagtgtatatca |
31035590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 31056724 - 31056851
Alignment:
| Q |
18 |
agtttagacttgaaacttcggtttt-ctcttcaggcatgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttaccta |
116 |
Q |
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|||||||||| ||||||| | |||| |||| || |||||||||| || ||||||| |||||||||||||||||||||||||| | | ||| |||||| || |
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| T |
31056724 |
agtttagactcgaaactttgatttttctctacaagcatgtagtataccacaacaagtcccacatcgagtatgtgttaaaacaggcaggaaggtttacata |
31056823 |
T |
|
| Q |
117 |
taaaataagggtgtatatcagatattaa |
144 |
Q |
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||||||||| ||||||||| ||||||| |
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| T |
31056824 |
taaaataagattgtatatcaaatattaa |
31056851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 31045951 - 31046020
Alignment:
| Q |
67 |
aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca |
136 |
Q |
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||||| |||||||||||||||||||||||||| | ||||| ||| ||||||||||||| |||||||||| |
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| T |
31045951 |
aacaagtcccacatcgagtatgtgttaaaacaggcatgaagatttccctataaaataagagtgtatatca |
31046020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 31027095 - 31027179
Alignment:
| Q |
52 |
catgtagtaaacaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca |
136 |
Q |
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||||||||| || ||||| | || ||||||||||||||||||||||| | | | |||||||||||||||||| |||||||||| |
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| T |
31027095 |
catgtagtataccacaactagtctcacatcgagtatgtgttaaaacaggcacagaggtttacctataaaataagagtgtatatca |
31027179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 5104 - 4985
Alignment:
| Q |
18 |
agtttagacttgaaacttcggttttctcttcaggcatgtagtaa-acaacaacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttaccta |
116 |
Q |
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|
|||||||||||| ||||| ||||||||||| ||| ||| ||||| || ||||||| |||||||| |||||| ||||||||| | | | ||||| ||| |
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| T |
5104 |
agtttagacttgtaactttggttttctcttaaggtatgcagtaataccacaacaagtcccacatagagtatacgttaaaacaggcactgaggtttatcta |
5005 |
T |
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| Q |
117 |
taaaataagggtgtatatca |
136 |
Q |
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||||||||| |||||||||| |
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| T |
5004 |
taaaataagagtgtatatca |
4985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 170779 - 170710
Alignment:
| Q |
67 |
aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca |
136 |
Q |
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|
||||| ||||||||||||||| ||||||||||| | ||| |||||||||||||||||| |||| ||||| |
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| T |
170779 |
aacaagtcccacatcgagtatatgttaaaacatagaagaaggtttacctataaaataagagtgtgtatca |
170710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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