View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_12 (Length: 334)
Name: NF4645_low_12
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 8653158 - 8653409
Alignment:
| Q |
18 |
aacatgatggcttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaataaggtaaaaattgaaaattgg |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8653158 |
aacatgatggcttacaatatttccttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaataaggtaaaaattgaaaatggg |
8653257 |
T |
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| Q |
118 |
tgaattttggattcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgtttgattaacttaatggctgggatgttaaatgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653258 |
tgaattttggattcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgtttgattaacttaatggctgggatgttaaatgtaa |
8653357 |
T |
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| Q |
218 |
ttatggaatcaaaaaacacttcannnnnnngggagcaaggattaataaaccc |
269 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8653358 |
ttatggaatcaaaaaacacttcatttttttgggagcaaggattaataaaccc |
8653409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 8653421 - 8653461
Alignment:
| Q |
265 |
aacccaatctaccacaaacttgatgggttgggttatttcaa |
305 |
Q |
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| T |
8653421 |
aacccaatctaccacaaacttgttgggttgggttatttcaa |
8653461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 38698645 - 38698490
Alignment:
| Q |
85 |
tgaacaaaaaataaggtaaaaattgaaaattggtgaattttggattcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgtt |
184 |
Q |
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| T |
38698645 |
tgaacaaaaaaaaacaaaaaaattgaaaatgggtgaattttggattcggatcggcaatatcgttctctatcccaatgcctaccgcaaatatctcactgtt |
38698546 |
T |
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| Q |
185 |
tgattaacttaatggctgggatgttaaatgtaattatggaatcaaaaaacacttca |
240 |
Q |
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| T |
38698545 |
tgattaacttaatggctgggatattaaatgtaattatggaatcaaaaaacacttca |
38698490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 35758756 - 35758834
Alignment:
| Q |
18 |
aacatgatggcttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaat |
96 |
Q |
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||||| |||||||||||||||| ||||| |||||||||||||||||| | | ||| |||||| |||||||| |||||| |
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| T |
35758756 |
aacataatggcttacaatatttccttttacattaagaacacaacttcgaaagaccgcttatgaatcatgaactaaaaat |
35758834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 41348627 - 41348549
Alignment:
| Q |
18 |
aacatgatggcttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaat |
96 |
Q |
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||||| |||||||||| ||||| ||||| |||||||||||||||||| | | | ||||||||| |||||||| |||||| |
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| T |
41348627 |
aacataatggcttacagtatttccttttacattaagaacacaacttcaaaagatcaattatgaatcatgaactaaaaat |
41348549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 38698685 - 38698647
Alignment:
| Q |
58 |
caacttccacataccaattatgactcatgaacaaaaaat |
96 |
Q |
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| T |
38698685 |
caacttccacataccaattatgaatcatgaacaaaaaat |
38698647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 35107483 - 35107406
Alignment:
| Q |
163 |
ctaccgcaaatatctcactg-tttgattaacttaatggctgggatgttaaatgtaattatggaatcaaaaaacacttc |
239 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||| ||| |||| |
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| T |
35107483 |
ctaccgcaaatatctcaccaatttgattaacttaatggctggaatattatatgtaattatggaatcaaagaacgcttc |
35107406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 29921079 - 29921156
Alignment:
| Q |
18 |
aacatgatggcttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaa |
95 |
Q |
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||||| |||||||||||||||| || || |||||||||||||||||| | | ||||||||||| |||||||| ||||| |
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| T |
29921079 |
aacataatggcttacaatatttcctcttacattaagaacacaacttcaaaagaccaattatgaatcatgaactaaaaa |
29921156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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