View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_13 (Length: 324)

Name: NF4645_low_13
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_13
NF4645_low_13
[»] chr4 (7 HSPs)
chr4 (1-301)||(48912447-48912747)
chr4 (35-301)||(48957955-48958221)
chr4 (168-301)||(48974062-48974195)
chr4 (56-300)||(48965161-48965405)
chr4 (166-269)||(48951185-48951288)
chr4 (200-278)||(48961267-48961345)
chr4 (32-89)||(48967266-48967323)
[»] scaffold0536 (3 HSPs)
scaffold0536 (14-300)||(6614-6900)
scaffold0536 (19-301)||(10595-10877)
scaffold0536 (166-276)||(1580-1690)
[»] chr2 (3 HSPs)
chr2 (1-276)||(13448140-13448415)
chr2 (1-270)||(13439977-13440246)
chr2 (32-258)||(13454642-13454868)
[»] chr7 (1 HSPs)
chr7 (1-301)||(3417629-3417929)
[»] chr6 (2 HSPs)
chr6 (164-301)||(12590274-12590411)
chr6 (164-270)||(12483600-12483706)
[»] chr8 (2 HSPs)
chr8 (164-276)||(12641608-12641720)
chr8 (14-113)||(12641771-12641870)
[»] chr5 (2 HSPs)
chr5 (1-186)||(28385111-28385296)
chr5 (21-301)||(12540482-12540762)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 48912747 - 48912447
Alignment:
Q  1 accttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912747 accttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacc 48912648  T
Q  101 ttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912647 ttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtg 48912548  T
Q  201 ttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatg 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912547 ttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatg 48912448  T
Q  301 t 301  Q
    |    
T  48912447 t 48912447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 301
Target Start/End: Original strand, 48957955 - 48958221
Alignment:
Q  35 aactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctc 134  Q
    |||||| ||||| | ||| |||||| ||||||||||||||||| ||||||||||| ||||||| |||| || ||| ||||  | |  || | ||||| |     
T  48957955 aactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtt 48958054  T
Q  135 tttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatg 234  Q
    | ||| ||| |||  ||   | ||| || |||||||| |||||||||||||| ||  |||| |  |||||||||||||||||||| ||||||||||||||    
T  48958055 tctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatg 48958154  T
Q  235 catcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 301  Q
    || |||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||    
T  48958155 caccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgt 48958221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 48974062 - 48974195
Alignment:
Q  168 caccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcact 267  Q
    |||| |||||||| ||||| ||  ||||||| |||||||||||||| ||||| ||||||||  ||||||  |||||||||||||||||||||||||||||    
T  48974062 caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcact 48974161  T
Q  268 aactgcctcaacagtggaattccacccacaatgt 301  Q
    ||| || || || ||||| |||||||| ||||||    
T  48974162 aacggcttccacggtggagttccacccgcaatgt 48974195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 300
Target Start/End: Original strand, 48965161 - 48965405
Alignment:
Q  56 attttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgc 155  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    |    
T  48965161 attttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaac 48965260  T
Q  156 tccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattgg 255  Q
     |||||| |||||||| || ||||| ||||||||  |||| | ||||||||  || || ||||| ||||||||||||||    ||||| || ||||| ||    
T  48965261 accattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcgg 48965360  T
Q  256 aacccctgcactaactgcctcaacagtggaattccacccacaatg 300  Q
    |||||| |||| ||| ||||| || ||||| ||||| ||||||||    
T  48965361 aacccccgcaccaacagcctccactgtggagttccaaccacaatg 48965405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 48951185 - 48951288
Alignment:
Q  166 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 265  Q
    |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| || || || | ||||| ||||||||||||||| ||||||||| ||    
T  48951185 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 48951284  T
Q  266 ctaa 269  Q
    ||||    
T  48951285 ctaa 48951288  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 48961267 - 48961345
Alignment:
Q  200 gttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaa 278  Q
    |||||||||||||| ||||| |||||||||||||| |  ||||| || |||||||| | |||||||||| | |||||||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaa 48961345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 48967266 - 48967323
Alignment:
Q  32 ccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 89  Q
    ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967266 ccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

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Target: scaffold0536 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 6900 - 6614
Alignment:
Q  14 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattat 113  Q
    ||||||||||| || |||||||||||||||||||  | | |||||||||||||||| |||||||  |||||||||| | ||||| ||||||||||| |||    
T  6900 gcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactat 6801  T
Q  114 ccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctc 213  Q
    ||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||||||||| |   ||||||||||||||||||| ||    
T  6800 ccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttc 6701  T
Q  214 attgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatg 300  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6700 attgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatg 6614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 10877 - 10595
Alignment:
Q  19 tttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctc 118  Q
    |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | |||||||||||| |||||||||||||||||||  |||||||    
T  10877 tttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctc 10778  T
Q  119 caaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgt 218  Q
    |  |||| ||||||| | ||||||||||||  |  || ||| ||   |||||| || ||| ||||||||||  |||| || |||||||||||||||||||    
T  10777 ccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgt 10678  T
Q  219 aaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 301  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||    
T  10677 aaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgt 10595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 1690 - 1580
Alignment:
Q  166 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 265  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||| | || || || ||||| || | ||| |  ||||| |||||||||||||  ||||||    
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgca 1591  T
Q  266 ctaactgcctc 276  Q
    ||||| |||||    
T  1590 ctaacagcctc 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 13448140 - 13448415
Alignment:
Q  1 accttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacc 100  Q
    |||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| ||||||||||| | | ||| ||    
T  13448140 accttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagcc 13448239  T
Q  101 ttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtg 200  Q
    ||||| ||  |||| || |  || | ||||| ||| ||| | | |||| | || | |||||| ||||||||||| || || ||||| ||  | |  ||||    
T  13448240 ttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtg 13448339  T
Q  201 ttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctc 276  Q
    ||||||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||| || |||||||| |||||    
T  13448340 ttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctc 13448415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 13439977 - 13440246
Alignment:
Q  1 accttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacc 100  Q
    |||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | ||||| ||    
T  13439977 accttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagcc 13440076  T
Q  101 ttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtg 200  Q
    ||||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| ||||| ||  | |  ||||    
T  13440077 ttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattgtg 13440176  T
Q  201 ttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaac 270  Q
    ||| ||  ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || ||||||||    
T  13440177 ttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaac 13440246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 258
Target Start/End: Original strand, 13454642 - 13454868
Alignment:
Q  32 ccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttct 131  Q
    ||||||||||||||| ||   ||||| || | |||||||||||||| | ||||||||| | ||||| ||||||| ||  ||||  | |  |||| |||||    
T  13454642 ccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttct 13454741  T
Q  132 ctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctcc 231  Q
    |||| ||| ||| |||| |||| | |||||| ||||||||||| || |  ||||| ||  | || |||||||| |  ||||| ||||| ||||| |||||    
T  13454742 ctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctcc 13454841  T
Q  232 atgcatcggccacgtgatcattggaac 258  Q
    ||| |  |||||||| |||||||||||    
T  13454842 atggactggccacgttatcattggaac 13454868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 3417929 - 3417629
Alignment:
Q  1 accttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacc 100  Q
    |||||||| ||| ||  ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||   ||    
T  3417929 accttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgcc 3417830  T
Q  101 ttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtg 200  Q
    ||||| || | ||| || |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| ||||| ||  | || ||||    
T  3417829 ttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttgtg 3417730  T
Q  201 ttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatg 300  Q
    |||| |  ||||||||| | ||||| ||||||||   ||||||||| ||||||||||| ||||||| ||| |||||||||   || |||| |||||||||    
T  3417729 ttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatg 3417630  T
Q  301 t 301  Q
    |    
T  3417629 t 3417629  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 12590411 - 12590274
Alignment:
Q  164 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 263  Q
    |||||||| || ||||| ||||| |||||||| |  ||||||||||||||||||||||| ||||| |||| ||  ||||| |||||||| ||||  || |    
T  12590411 gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccag 12590312  T
Q  264 cactaactgcctcaacagtggaattccacccacaatgt 301  Q
    ||||||| ||||| ||   ||||||||| |||||||||    
T  12590311 cactaaccgcctccacgacggaattccatccacaatgt 12590274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 12483706 - 12483600
Alignment:
Q  164 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 263  Q
    ||||||||||| ||||| ||||||||  |||| |  ||||| |  |||||||||||||| ||||| || || | |||||||||||||||||||| |||||    
T  12483706 gttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctg 12483607  T
Q  264 cactaac 270  Q
    |||||||    
T  12483606 cactaac 12483600  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 12641720 - 12641608
Alignment:
Q  164 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 263  Q
    |||||||| ||||||||||||||||   ||||    ||||||| ||||||||| || || |||||||| ||||  ||||||||||||||||||| |||||    
T  12641720 gttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctg 12641621  T
Q  264 cactaactgcctc 276  Q
    ||||||| |||||    
T  12641620 cactaacagcctc 12641608  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 12641870 - 12641771
Alignment:
Q  14 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattat 113  Q
    |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  ||||||||||| | ||||| | ||||| ||| |||    
T  12641870 gcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28385111 - 28385296
Alignment:
Q  1 accttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaacc 100  Q
    |||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | ||| | ||    
T  28385111 accttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagcc 28385210  T
Q  101 ttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 186  Q
    ||||| || ||||| || |  |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| |||||    
T  28385211 ttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaat 28385296  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 12540482 - 12540762
Alignment:
Q  21 tagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctcca 120  Q
    |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  |||||||||| | ||| | ||||||| ||   ||| || |     
T  12540482 tagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgcc 12540581  T
Q  121 aaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaa 220  Q
    ||||| ||||| ||| |||||| ||||| |||| | |||||| |||||||| || || || ||||| ||  | ||||||||||| |  ||||| ||| |     
T  12540582 aaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaat 12540681  T
Q  221 aattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgt 301  Q
    || || ||||||||   ||||||||| ||||||||||| || |||| ||| ||||| ||| | || || | ||||||||||    
T  12540682 aagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgt 12540762  T

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