View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_15 (Length: 291)

Name: NF4645_low_15
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_15
NF4645_low_15
[»] chr7 (1 HSPs)
chr7 (1-291)||(38355985-38356276)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 38355985 - 38356276
Alignment:
Q  1 tcatcaaccctaatactttatatacttttggtacacttaagagaagttaacatgaatagatacagctagttatgtttattatacactctcacattccaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38355985 tcatcaaccctaatactttatatacttttggtacacttaagagaagttaacatgaatagatacagctagttatgtttattatacactctcacattccaag 38356084  T
Q  101 aacttgattatcaaccacaaatgctacctat-----actatagttcaaggcctaaataaaggtatttgctaaaaattccacatatttggtatgaaacact 195  Q
    |||||    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  38356085 aactt----atcaaccacaaatgctacctatactatactatagttcaaggcctaaataaaggtatttgctaaaaattccacatatttggtatgagacaca 38356180  T
Q  196 tggaaaatcaatatcccccatgtaactatacttgaatagcacattctagttttcaagatacttgagataaccataaggtgcaattaaaaatcattc 291  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  || ||| ||||| ||||||||| |||||    
T  38356181 tggaaaatcaatatcccctatgtaactatacttgaatagcacattctagttttcaagatacttgagtgaaacatgaggtgaaattaaaaagcattc 38356276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University