View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_19 (Length: 259)

Name: NF4645_low_19
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_19
NF4645_low_19
[»] chr7 (25 HSPs)
chr7 (84-225)||(21102070-21102211)
chr7 (55-235)||(23587782-23587962)
chr7 (56-233)||(21227342-21227519)
chr7 (132-199)||(16223985-16224052)
chr7 (101-236)||(19398625-19398760)
chr7 (55-195)||(8157638-8157778)
chr7 (127-202)||(9500626-9500701)
chr7 (121-218)||(26134558-26134655)
chr7 (132-179)||(16306898-16306945)
chr7 (127-207)||(5797689-5797769)
chr7 (137-209)||(9062980-9063052)
chr7 (127-179)||(9245385-9245437)
chr7 (128-176)||(9864168-9864216)
chr7 (127-207)||(14754974-14755054)
chr7 (127-202)||(5530202-5530277)
chr7 (127-194)||(21884996-21885063)
chr7 (136-234)||(9890337-9890434)
chr7 (127-179)||(1872992-1873044)
chr7 (126-196)||(140306-140376)
chr7 (106-179)||(8938058-8938130)
chr7 (145-207)||(18495545-18495607)
chr7 (134-179)||(7397349-7397394)
chr7 (141-198)||(9916712-9916769)
chr7 (141-198)||(9924624-9924681)
chr7 (157-209)||(1727769-1727821)
[»] chr5 (14 HSPs)
chr5 (106-225)||(32417166-32417285)
chr5 (72-225)||(27921180-27921332)
chr5 (102-201)||(23031305-23031404)
chr5 (101-233)||(23014401-23014533)
chr5 (129-207)||(15470117-15470195)
chr5 (71-241)||(25922628-25922800)
chr5 (127-195)||(24852012-24852080)
chr5 (127-195)||(29263422-29263490)
chr5 (126-207)||(15544228-15544309)
chr5 (127-208)||(24167425-24167506)
chr5 (126-207)||(26307791-26307872)
chr5 (126-179)||(26313926-26313979)
chr5 (127-208)||(32448141-32448222)
chr5 (127-207)||(28253469-28253549)
[»] chr3 (7 HSPs)
chr3 (62-235)||(21083424-21083597)
chr3 (136-236)||(27542754-27542853)
chr3 (136-207)||(25756853-25756923)
chr3 (134-207)||(6290079-6290151)
chr3 (127-179)||(821354-821406)
chr3 (127-195)||(13908093-13908161)
chr3 (127-195)||(23056003-23056071)
[»] chr2 (9 HSPs)
chr2 (127-207)||(45621722-45621802)
chr2 (136-231)||(29883408-29883502)
chr2 (129-201)||(45553313-45553384)
chr2 (136-207)||(27869876-27869947)
chr2 (138-207)||(25070315-25070384)
chr2 (136-232)||(25937088-25937183)
chr2 (127-195)||(26291259-26291327)
chr2 (140-179)||(8446899-8446938)
chr2 (134-179)||(23933393-23933437)
[»] chr4 (16 HSPs)
chr4 (127-207)||(9737350-9737430)
chr4 (127-207)||(11521034-11521114)
chr4 (127-207)||(11700414-11700494)
chr4 (127-195)||(12761435-12761503)
chr4 (127-179)||(9052881-9052933)
chr4 (127-207)||(19900757-19900837)
chr4 (127-207)||(23080508-23080587)
chr4 (136-208)||(25643650-25643722)
chr4 (136-187)||(10107224-10107275)
chr4 (150-207)||(20315178-20315235)
chr4 (127-207)||(22526543-22526623)
chr4 (106-217)||(10589802-10589911)
chr4 (127-160)||(21323719-21323752)
chr4 (125-177)||(12839626-12839678)
chr4 (131-195)||(15049928-15049992)
chr4 (131-195)||(15104432-15104496)
[»] chr6 (10 HSPs)
chr6 (136-236)||(33655723-33655822)
chr6 (133-207)||(9726201-9726275)
chr6 (136-209)||(9386241-9386314)
chr6 (126-195)||(9277108-9277176)
chr6 (150-195)||(9291848-9291893)
chr6 (127-207)||(24188072-24188152)
chr6 (134-197)||(24215665-24215727)
chr6 (126-196)||(2586908-2586977)
chr6 (136-172)||(20404525-20404561)
chr6 (127-195)||(28585871-28585939)
[»] chr8 (10 HSPs)
chr8 (136-234)||(17972326-17972425)
chr8 (55-225)||(17969597-17969766)
chr8 (127-202)||(15238981-15239056)
chr8 (127-202)||(5052767-5052842)
chr8 (129-195)||(31288530-31288596)
chr8 (127-195)||(5851133-5851201)
chr8 (84-163)||(17968714-17968793)
chr8 (136-195)||(26008244-26008303)
chr8 (132-176)||(9642088-9642131)
chr8 (127-207)||(17965222-17965302)
[»] chr1 (5 HSPs)
chr1 (136-234)||(24306793-24306890)
chr1 (127-179)||(17837720-17837772)
chr1 (127-207)||(24267622-24267702)
chr1 (127-231)||(33712832-33712937)
chr1 (129-207)||(6501395-6501473)
[»] scaffold0238 (1 HSPs)
scaffold0238 (127-202)||(19294-19369)
[»] scaffold0128 (1 HSPs)
scaffold0128 (132-195)||(439-502)
[»] scaffold0672 (1 HSPs)
scaffold0672 (127-179)||(1938-1990)
[»] scaffold0653 (1 HSPs)
scaffold0653 (127-179)||(4326-4378)
[»] scaffold0394 (1 HSPs)
scaffold0394 (131-195)||(13753-13816)
[»] scaffold0136 (1 HSPs)
scaffold0136 (127-207)||(15306-15386)
[»] scaffold0085 (1 HSPs)
scaffold0085 (141-209)||(22406-22474)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 21102070 - 21102211
Alignment:
Q  84 aacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgacc 183  Q
    |||| ||||||||||| ||||||||||||| |||  ||||||||||||| ||||| ||||||||| |||||  | ||||||||||| |||||||||  ||    
T  21102070 aactcatcacttaaatgggtaccatttaaccaattcctgaataacttgattgttacttaattccaacaaatagaaagaggggattcgaagaatcctatcc 21102169  T
Q  184 accgctaacattttgcaataaaaaacacgttacttctaaact 225  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  21102170 accgctaacattttgcaataaaaaacaggttacccctaaact 21102211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 235
Target Start/End: Complemental strand, 23587962 - 23587782
Alignment:
Q  55 tcaacaactggaggagataaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaat 154  Q
    ||||||||| || | ||||||||||||  || |  |||||||||| ||||||||||||| |||| |||||||   ||||||||  |||| |||| |||||    
T  23587962 tcaacaactagatgggataaaactccacgaattcctcacttaaatgggtaccatttaaccaatccctgaatagtctgactgttttttaaatccaacaaat 23587863  T
Q  155 gaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctga 235  Q
     |||||||||| ||| |||||| || ||||||||||||||| |||||||||||||| |||||| ||||||| ||| |||||    
T  23587862 aaatagaggggtttcgaagaattctaaccaccgctaacattctgcaataaaaaacaggttactcctaaactcttggtctga 23587782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 21227519 - 21227342
Alignment:
Q  56 caacaactggaggagataaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatg 155  Q
    |||||| |||||  |||||||| |||  |||| || ||||||   ||||| ||||||| ||||  ||||||  |||  ||||| ||| ||||| |||||     
T  21227519 caacaattggagaggataaaaccccacaaactcatgacttaagagggtactatttaaccaatccatgaatagtttggttgttacttagttccaacaaata 21227420  T
Q  156 aatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctct 233  Q
    |||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||| |||||||    
T  21227419 aatagaggggattcgaagaatcctaaccactgctaatattttgcaataaaaaacatgttacttctaaactcttgctct 21227342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 16223985 - 16224052
Alignment:
Q  132 actgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgc 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  16223985 actgttaattaattccaacaaatgaatagaggggattcaaagaatcctaaccatcgctaacattttgc 16224052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 19398625 - 19398760
Alignment:
Q  101 ggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgca 200  Q
    |||||||||||||||||| |  ||||  ||||||||||  |||||||| |||||  ||||||| ||||||||||||||| ||||||||||| ||| |||     
T  19398625 ggtaccatttaacaaatcccataatagattgactgttatataattccaacaaatagatagaggagattcaaagaatcctaaccaccgctaatattgtgct 19398724  T
Q  201 ataaaaaacacgttacttctaaacttttgctctgag 236  Q
    |||||||| | |||||| ||||||| | ||||||||    
T  19398725 ataaaaaataggttactactaaactctcgctctgag 19398760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 195
Target Start/End: Complemental strand, 8157778 - 8157638
Alignment:
Q  55 tcaacaactggaggagataaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaat 154  Q
    |||||||||||||| |||||||  |||  |||| ||||||||||| ||||||||||||| |||   ||||||  |||  ||||| ||||||| | |||||    
T  8157778 tcaacaactggaggggataaaatcccacgaactcatcacttaaatgggtaccatttaaccaattcttgaatagattgtgtgttacttaattctaacaaat 8157679  T
Q  155 gaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
     ||||||| || ||| ||||||| | |||||||||||||||    
T  8157678 aaatagagaggtttcgaagaatcataaccaccgctaacatt 8157638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 9500701 - 9500626
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaat 202  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||| |||||| |||  || ||||||||||||||    
T  9500701 acttgactattaattaattccaacaaatgaatagaggagattcaaataatcctaaccgtcggtaacattttgcaat 9500626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 26134558 - 26134655
Alignment:
Q  121 tgaataacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttactt 218  Q
    ||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||| || ||  ||| ||||||| || ||||||||| | |||||||    
T  26134558 tgaataacttgactgttacataattccaacaaataaataaaggggattcaaagaattctaactgccgttaacattctgtaataaaaaataggttactt 26134655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 16306945 - 16306898
Alignment:
Q  132 actgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  16306945 actgttaattcattccaacaaatgaatagaggggattcaaagaatcct 16306898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 5797769 - 5797689
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||||| |||||| | ||| |  ||||||||||||||||||||||| ||| | ||||||||| |||||| ||||    
T  5797769 acttgactgttaagtaattcgaacaactacatagaggggattcaaagaatcctaaccgctgctaacattctgcaatcaaaa 5797689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 9063052 - 9062980
Alignment:
Q  137 taattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaac 209  Q
    ||||||| |||| ||||||||||||| |||||| |||||| || ||| ||||||||||| |||||| ||||||    
T  9063052 taattaagtccaacaaatgaatagagaggattctaagaattctaaccgccgctaacattctgcaatcaaaaac 9062980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9245437 - 9245385
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  9245437 acttgactattaattaattccagcaaataaataggggggattcaaagaatcct 9245385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 9864168 - 9864216
Alignment:
Q  128 cttgactgttaattaattccatcaaatgaatagaggggattcaaagaat 176  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  9864168 cttgactgttaattaattcccacaaatgaatggaggggattcaaagaat 9864216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 14754974 - 14755054
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||||||||||||||||||| | ||| |||||| ||||||||||||||| | ||| ||  ||||||| |||||| ||||    
T  14754974 acttgactgttaattaattccaactaataaatagatgggattcaaagaatcttaaccgccattaacattctgcaatcaaaa 14755054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 5530277 - 5530202
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaat 202  Q
    |||||| ||||||||||||  | |||||||||| ||| ||||||| ||||||| |||||||||||| || ||||||    
T  5530277 acttgattgttaattaattgtaacaaatgaataaaggagattcaatgaatcctaaccaccgctaaccttatgcaat 5530202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 21884996 - 21885063
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacat 194  Q
    ||||||||||||  |||||||| |||||  ||| |||||||||||||||| || ||||||||||||||    
T  21884996 acttgactgttacgtaattccaacaaatatatataggggattcaaagaattctaaccaccgctaacat 21885063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 9890434 - 9890337
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctg 234  Q
    ||||||||||||| ||||| |||||||||||||  ||||||| | ||| ||||||| ||| ||||||  |||||| |||  ||||||||| ||||||||    
T  9890434 ttaattaattccaacaaattaatagaggggatttgaagaatcttaaccgccgctaagattctgcaat-caaaacaggttgtttctaaactcttgctctg 9890337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 1873044 - 1872992
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    ||||||||||||  ||| |||| ||||| ||||||||||||||||||||||||    
T  1873044 acttgactgttacgtaaatccaacaaataaatagaggggattcaaagaatcct 1872992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 140376 - 140306
Alignment:
Q  126 aacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattt 196  Q
    |||||||||||||  ||| |||| ||||| | |||| ||||||||||||||||||||| |  |||||||||    
T  140376 aacttgactgttacgtaaatccaacaaataagtagaagggattcaaagaatcctgaccgctactaacattt 140306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 8938058 - 8938130
Alignment:
Q  106 catttaacaaatctctgaataa--cttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||| |||| ||||||||  ||||||  ||||||||||||| ||||||||||   |||||||||||||||||    
T  8938058 catttaaccaatccctgaataatacttgaccattaattaattccaacaaatgaata---gggattcaaagaatcct 8938130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 18495607 - 18495545
Alignment:
Q  145 tccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||| ||||| ||||||||||||| |||||||||| ||  ||||||||||| |||||| ||||    
T  18495607 tccaacaaataaatagaggggatttaaagaatcctaacagccgctaacattctgcaatcaaaa 18495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 7397394 - 7397349
Alignment:
Q  134 tgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    ||||| ||||||||| ||||||||||||||| |||| |||||||||    
T  7397394 tgttatttaattccaacaaatgaatagagggaattcgaagaatcct 7397349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 9916769 - 9916712
Alignment:
Q  141 taattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttg 198  Q
    |||||||| ||| | ||||||||| |||| ||||||||| ||| ||||||||||||||    
T  9916769 taattccaacaattaaatagagggaattcgaagaatcctaaccgccgctaacattttg 9916712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 9924681 - 9924624
Alignment:
Q  141 taattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttg 198  Q
    |||||||| ||| | ||||||||| |||| ||||||||| ||| ||||||||||||||    
T  9924681 taattccaacaattaaatagagggaattcgaagaatcctaaccgccgctaacattttg 9924624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 1727821 - 1727769
Alignment:
Q  157 atagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaac 209  Q
    ||||||||||||  || |||||| || ||||||||||||||||||| ||||||    
T  1727821 atagaggggatttgaaaaatcctaactaccgctaacattttgcaatcaaaaac 1727769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 32417166 - 32417285
Alignment:
Q  106 catttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaa 205  Q
    |||||||| |||| || |||||||||||||||| ||||||||| ||| | |||||||||||||| ||||||||| |||||| |||||||| || ||||||    
T  32417166 catttaactaatccctaaataacttgactgttacttaattccaacaagtaaatagaggggattcgaagaatcctaaccaccactaacattctgaaataaa 32417265  T
Q  206 aaacacgttacttctaaact 225  Q
    ||| | ||||||||||||||    
T  32417266 aaataggttacttctaaact 32417285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 27921180 - 27921332
Alignment:
Q  72 taaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagaggggattcaa 171  Q
    |||||| |||| | || ||||||||||| || | |||||||| ||||  |||||||| | ||||||| |||| |||| ||||| |||| ||||||||| |    
T  27921180 taaaaccccatgatctcatcacttaaatgggaaacatttaaccaatccatgaataacgt-actgttacttaactccaacaaataaataaaggggattcga 27921278  T
Q  172 agaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaact 225  Q
    |||||||| ||| | ||||||||| |||||| |||| || ||||||||||||||    
T  27921279 agaatcctaacctctgctaacattctgcaatcaaaaccaggttacttctaaact 27921332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 23031404 - 23031305
Alignment:
Q  102 gtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaa 201  Q
    ||||||||||| |||||||| ||||  ||||||||||||||||| ||  ||||  |||||||  |||||||||||| | |||||||||||||||||||||    
T  23031404 gtaccatttaaaaaatctctaaatagattgactgttaattaatttcaaaaaatagatagaggaaattcaaagaatcttaaccaccgctaacattttgcaa 23031305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 23014401 - 23014533
Alignment:
Q  101 ggtaccatttaacaaatctctgaataacttgactgttaattaattcc-atcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgc 199  Q
    ||||| ||||||| ||||||||||||| || | || || |||||||| | |||||  ||||||  |||||||||| |||| ||||||||||||||| |||    
T  23014401 ggtactatttaactaatctctgaataatttaagtgatatttaattcccaacaaatagatagagaagattcaaaga-tcctaaccaccgctaacattctgc 23014499  T
Q  200 aataaaaaacacgttacttctaaacttttgctct 233  Q
    | | ||||||| |||||||||||||||| |||||    
T  23014500 atttaaaaacaggttacttctaaactttcgctct 23014533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 15470195 - 15470117
Alignment:
Q  129 ttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||  ||| |||| ||||| |||||||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  15470195 ttgactgttatgtaaatccaacaaataaatagaggggattcaaagaatcctaaccgccgctaatattttgcaatcaaaa 15470117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 25922628 - 25922800
Alignment:
Q  71 ataaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataac--ttgactgttaattaattccatcaaatgaatagaggggatt 168  Q
    |||||||||||  |||| ||||||||||| |    |||||||| ||| |||||||||   |||||  ||||||||||||  |||||||||| | | ||||    
T  25922628 ataaaactccacaaactcatcacttaaatagaatacatttaaccaatatctgaataatgtttgaccattaattaattccgacaaatgaataaatgagatt 25922727  T
Q  169 caaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctgagtaaat 241  Q
    | || |||| | ||  |||||||||||||||||| | ||||| |||||| ||||||| |||||||||| ||||    
T  25922728 ctaaaaatcttaacagccgctaacattttgcaatcataaacatgttactcctaaactcttgctctgagcaaat 25922800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 24852012 - 24852080
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  24852012 acttgactgttacataaatccaacaaatgaatagaggggattcaaagaatcctaaccactgctatcatt 24852080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 29263422 - 29263490
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||  |||||| | ||| | |||||||||||||| ||||||||| |||||||||||||||    
T  29263422 acttgactgttatgtaattctaacaattaaatagaggggattcgaagaatcctaaccaccgctaacatt 29263490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 15544309 - 15544228
Alignment:
Q  126 aacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||||||||||  |||||| | ||| | |||||||||||||| | ||||||| ||  |||||||||||||||||| ||||    
T  15544309 aacttgactgttacgtaattctaacaattaaatagaggggattcgaggaatcctaactgccgctaacattttgcaatcaaaa 15544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 24167425 - 24167506
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaa 208  Q
    |||||| ||||| | |||| || ||||||||||| |||||||||||||||||| ||  | ||||||||| ||||| ||||||    
T  24167425 acttgattgttattcaatttcaacaaatgaatagtggggattcaaagaatcctaactgctgctaacattctgcaacaaaaaa 24167506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 26307872 - 26307791
Alignment:
Q  126 aacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||| |||||| |||||| | || || |||||| ||||||||||| ||||| ||| ||||||||||| |||||| ||||    
T  26307872 aacttgattgttaagtaattctaacatataaatagatgggattcaaagtatcctaaccgccgctaacattctgcaatcaaaa 26307791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 26313979 - 26313926
Alignment:
Q  126 aacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    ||||||||||||||||||||  |  ||||||||||||| |||||||||||||||    
T  26313979 aacttgactgttaattaattttaagaaatgaatagaggagattcaaagaatcct 26313926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 32448222 - 32448141
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaa 208  Q
    ||||||||||||| |||||||| ||||| |||||||| || ||||| |||  | |||| || ||||||| |||||| |||||    
T  32448222 acttgactgttaagtaattccaacaaataaatagaggagactcaaaaaattttaaccatcgttaacattctgcaatcaaaaa 32448141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 28253549 - 28253469
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||| |||||| |||||||| ||||| ||||| | |||||| || |||  | |||||| ||||||||||||||| ||||    
T  28253549 acttgattgttaagtaattccaacaaataaatagggaggattcgaataatattaaccaccactaacattttgcaatcaaaa 28253469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 21083597 - 21083424
Alignment:
Q  62 ctggaggagataaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatgaataga 161  Q
    ||||||| |||||||| |||  |||| ||||||||||| |||| |||||||| | |||||||||||| || |||| | |||||| || ||||||||||||    
T  21083597 ctggaggggataaaaccccacaaactcatcacttaaatgggtatcatttaactagtctctgaataacctgtctgtcacttaatttcaacaaatgaataga 21083498  T
Q  162 ggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctga 235  Q
    ||  |||| |||||| || ||| ||  |||| || ||||||||||| || |||||||||||||| | |||||||    
T  21083497 ggatattcgaagaattctaaccgcctgtaacgttctgcaataaaaatcaggttacttctaaactctcgctctga 21083424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 27542754 - 27542853
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctga 235  Q
    ||||||||||||| |||||||||||| ||||||| |||||| || ||||||| |||| || || |||  |||||| |||||||||||||| |||||||||    
T  27542754 ttaattaattccaacaaatgaatagatgggattcgaagaattctaaccaccgttaactttctgtaat-caaaacaggttacttctaaactcttgctctga 27542852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 25756923 - 25756853
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||||| ||||| ||||||| |||||| |||| |||| |||||||||||||||||||||| ||||    
T  25756923 ttaattaattccaacaaataaatagagaggattcgaaga-tcctaaccaccgctaacattttgcaatcaaaa 25756853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 6290151 - 6290079
Alignment:
Q  134 tgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||||||  ||||||| ||| ||||||||||| |||||| ||||||||||||||| |||||| ||||    
T  6290151 tgttaattaattcctacaaatgagtag-ggggattcaaataatcctaaccaccgctaacattctgcaattaaaa 6290079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 821354 - 821406
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||||||| ||||||||| ||||| |||||||| |||||| ||||||||    
T  821354 acttgactgttatttaattccaacaaataaatagaggagattcagagaatcct 821406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 13908093 - 13908161
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    |||||| |||| |||||||||| ||||||| | ||||||||||||| |||||| ||| || ||||||||    
T  13908093 acttgattgtttattaattccaacaaatgagtggaggggattcaaataatcctaaccgccactaacatt 13908161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 23056003 - 23056071
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||| |||||||| ||||| || | | ||||||| ||||||||| ||| |||||||||||    
T  23056003 acttgactgttaagtaattccaacaaataaaaaaaagggattcgaagaatcctaaccgccgctaacatt 23056071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 45621722 - 45621802
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||| |||||| ||||    
T  45621722 acttgactgttaattaattccaacaaatgaatagaggggattcaaagaatcttaaccgccgctaacattctgcaatcaaaa 45621802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 29883502 - 29883408
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgct 231  Q
    ||||||||||||| |||||||||||| | ||||| ||||||||| ||| ||  ||||||||||||||  |||||| |||||| ||||||| |||||    
T  29883502 ttaattaattccaacaaatgaatagatgagattcgaagaatcctaaccgccattaacattttgcaat-caaaacaggttactcctaaactcttgct 29883408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 45553384 - 45553313
Alignment:
Q  129 ttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaa 201  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||| | |||||| || |||||    
T  45553384 ttgactgttaaataattccaacaaatgaatag-ggggattcaaagaatcctaaccgctgctaacgttctgcaa 45553313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 27869947 - 27869876
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||| || || ||||| ||||||||||||||||||||| || ||| ||||||||||| |||||| ||||    
T  27869947 ttaattactttcaacaaattaatagaggggattcaaagaattctaaccgccgctaacattctgcaatcaaaa 27869876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 25070384 - 25070315
Alignment:
Q  138 aattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||| | ||||||||||||||| |||| ||||||| | ||| |||||||||| ||||||| ||||    
T  25070384 aattaattctaacaaatgaatagagggaattcgaagaatcataaccgccgctaacatcttgcaatcaaaa 25070315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 25937183 - 25937088
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctc 232  Q
    ||||||||||||| |||||||||| | ||||||| | ||||||| ||| |||| |||||| ||||||  |||||| |||| | ||||||| ||||||    
T  25937183 ttaattaattccaacaaatgaataaaagggattcgaggaatcctaaccgccgcaaacattctgcaat-caaaacatgttattcctaaactcttgctc 25937088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 26291327 - 26291259
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||||||||| ||  |||| ||||||||||||||||| |||| | |||||| ||| ||||    
T  26291327 acttgactgttaattaatttcaataaattaatagaggggattcaaaaaatcttaaccaccactatcatt 26291259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 8446899 - 8446938
Alignment:
Q  140 ttaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  8446899 ttaattccaacaaatgaatagaggggattcaaataatcct 8446938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 23933393 - 23933437
Alignment:
Q  134 tgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  23933393 tgttatttaattccagcaaatgaatag-ggggattcaaagaatcct 23933437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 9737350 - 9737430
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||| ||| ||||||||||| |||||| ||||    
T  9737350 acttgactgttaattaattccaacaaatgaatagaggacattcaaagaatcctaaccgccgctaacattctgcaatcaaaa 9737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 11521034 - 11521114
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||| |||||||||||| || ||||||||||||||  |||||||||||||| ||||||||||||||| |||||| ||||    
T  11521034 acttgattgttaattaatttcaacaaatgaatagaggatattcaaagaatcctaaccaccgctaacattctgcaatcaaaa 11521114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 11700414 - 11700494
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||||||||||||||  ||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||| ||||    
T  11700414 acttgactgttaattaattccaagaaatgtatagaggagattcaaagaatcctaaccgccgctaacattctgcaatcaaaa 11700494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 12761503 - 12761435
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||||||| | ||| | |||||||||    
T  12761503 acttgactgttacgtaaatccatcaaatgaatagaggggattcaaagaatcataaccgctgctaacatt 12761435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9052933 - 9052881
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||||||||||    
T  9052933 acttgactgttatttaattccaacgaataaatagaggggattcaaagaatcct 9052881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 19900837 - 19900757
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||| ||||| |||||||| ||||| |||| ||||||| | ||||||||| ||| ||||||||||| |||||| ||||    
T  19900837 acttgacagttaagtaattccaacaaataaatataggggatccgaagaatcctaacctccgctaacattatgcaatcaaaa 19900757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 23080587 - 23080508
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||| |||| ||||||||| ||||| ||||| |||||||||||||||| | ||| ||||||||||| |||||| ||||    
T  23080587 acttgacagttatttaattccaacaaataaatag-ggggattcaaagaatcttaaccgccgctaacattctgcaatcaaaa 23080508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 25643722 - 25643650
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaa 208  Q
    ||||||||||||| |||||||||| |||||| || ||||| ||| ||||| ||||| ||| ||||||||||||    
T  25643722 ttaattaattccaacaaatgaatataggggactcgaagaaccctaaccactgctaatattctgcaataaaaaa 25643650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 10107275 - 10107224
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccg 187  Q
    ||||||||||||| |||||||||||||||||||| ||||||| | |||||||    
T  10107275 ttaattaattccaacaaatgaatagaggggattcgaagaatcataaccaccg 10107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 20315235 - 20315178
Alignment:
Q  150 caaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||| |||||||||||||||||||||||| ||| || |||||||| |||||| ||||    
T  20315235 caaataaatagaggggattcaaagaatcctaaccgccactaacattctgcaatcaaaa 20315178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 22526623 - 22526543
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||| |||||  |||||||| ||| | ||||||| |||||||||||||| | ||| ||||||||||| |||||| ||||    
T  22526623 acttgattgttacgtaattccaacaattaaatagagaggattcaaagaatcataaccgccgctaacattatgcaatcaaaa 22526543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 10589911 - 10589802
Alignment:
Q  106 catttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaa 205  Q
    |||||||| |||| ||||||||||  | ||||| || | |||| || |||||||||||| |||||||||||||| ||| | ||||||||| |||||| ||    
T  10589911 catttaaccaatccctgaataactata-tgttactttaatccaacatatgaatagaggg-attcaaagaatcctaaccgctgctaacattctgcaatcaa 10589814  T
Q  206 aaacacgttact 217  Q
    || || ||||||    
T  10589813 aatcaggttact 10589802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 21323719 - 21323752
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatag 160  Q
    |||||||||||||||||||||| |||||||||||    
T  21323719 acttgactgttaattaattccaacaaatgaatag 21323752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 12839626 - 12839678
Alignment:
Q  125 taacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatc 177  Q
    ||||||||||| ||||||||| ||  |||| ||||||||||| ||||||||||    
T  12839626 taacttgactgataattaatttcaaaaaataaatagaggggaatcaaagaatc 12839678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 15049928 - 15049992
Alignment:
Q  131 gactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||| || ||| | ||||||||||  |||||||| |||||| || |||||||||||||||    
T  15049928 gactgttaaatacttcaaacaaatgaataatggggattcgaagaattctaaccaccgctaacatt 15049992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 15104496 - 15104432
Alignment:
Q  131 gactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||| || ||| | ||||||||||  |||||||| |||||| || |||||||||||||||    
T  15104496 gactgttaaatacttcaaacaaatgaataatggggattcgaagaattctaaccaccgctaacatt 15104432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 33655723 - 33655822
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctga 235  Q
    |||||||||| || |||||||||||||||||||| ||||||||| || ||| |||||||| ||||||  |||||| |||||||||||||| | |||||||    
T  33655723 ttaattaatttcaacaaatgaatagaggggattcgaagaatcctaactaccactaacattctgcaat-caaaacaggttacttctaaactatcgctctga 33655821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 9726275 - 9726201
Alignment:
Q  133 ctgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||| ||| || |||||||| |||||| ||||    
T  9726275 ctgttaattaattccaacaaataaatagagggaattcaaagaatcctaaccgccactaacattctgcaatcaaaa 9726201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 9386314 - 9386241
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaac 209  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||| ||| ||||||||||| |||||| ||||||    
T  9386314 ttaattaattccaacaaatggatagagggaattcgaagaatcctaaccgccgctaacattctgcaatcaaaaac 9386241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 9277108 - 9277176
Alignment:
Q  126 aacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  9277108 aacttgactgttaattaattaaa-caaataaatagaggggattcaaagaatcctaaccgccgcgaacatt 9277176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 9291848 - 9291893
Alignment:
Q  150 caaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||    
T  9291848 caaataaatagaggggattcaaagaatcctaaccgccgctaacatt 9291893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 24188072 - 24188152
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||| |||||| | ||| || ||||| ||||||||||||||||| |||||| || | |||||||||||| |||| ||||    
T  24188072 acttgattgttaagtcatttcaacaaataaatagaggggattcaaaaaatcctaactatcgctaacatttttcaatcaaaa 24188152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 24215727 - 24215665
Alignment:
Q  134 tgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatttt 197  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||| ||  |||||||||||||    
T  24215727 tgttatttaattcaaacaaatgaatag-ggggattcaaagaatcctaactgccgctaacatttt 24215665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 2586977 - 2586908
Alignment:
Q  126 aacttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattt 196  Q
    ||||||||| ||| ||||||||| |||||| |||| |||||||||||||||||| ||| | | ||||||||    
T  2586977 aacttgactattatttaattccaacaaatgtatag-ggggattcaaagaatcctaaccgctggtaacattt 2586908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 20404525 - 20404561
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaa 172  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  20404525 ttaattaattccaacaaatgtatagaggggattcaaa 20404561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 28585871 - 28585939
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||| ||||  |||||||| ||| | |||||||||||||  ||||||||| ||| |||||||||||    
T  28585871 acttgacggttacgtaattccaacaattaaatagaggggatttgaagaatcctaaccgccgctaacatt 28585939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 17972425 - 17972326
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttc-taaacttttgctctg 234  Q
    ||||||| ||||| |||||||||| ||||||||| ||||||||| ||| ||||||| | |||||||||||||||| |||| ||| |||||| ||||||||    
T  17972425 ttaattagttccaacaaatgaataaaggggattcgaagaatccttaccgccgctaaaactttgcaataaaaaacaggttaattcataaactcttgctctg 17972326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 17969766 - 17969597
Alignment:
Q  55 tcaacaactggaggagataaaactccatcaacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaat 154  Q
    |||||| | ||||| |||||||| |||  |||||||||||||||| | ||||||||||| |||  || || ||||||| ||||| | ||||||| |||||    
T  17969766 tcaacagccggaggggataaaaccccacaaacttatcacttaaatggttaccatttaaccaattcctaaacaacttgattgttactcaattccaacaaat 17969667  T
Q  155 gaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaact 225  Q
     |||||||| ||||| || |||| | | |  ||||||||||||| ||| ||||||| ||||||| ||||||    
T  17969666 aaatagaggagattcgaaaaatcat-atctgcgctaacattttgtaatgaaaaacaggttacttataaact 17969597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 15239056 - 15238981
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaat 202  Q
    |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||| ||| || | |||||| ||||||    
T  15239056 acttgactcttatttaattccaacaaataaatagaggggattcaaagaatcctaaccgcctcgaacattctgcaat 15238981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 5052767 - 5052842
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaat 202  Q
    |||||||||||||||||||||| |||||| ||| ||||||||| ||  || || ||| ||||||||||| ||||||    
T  5052767 acttgactgttaattaattccaacaaatgtatataggggattcgaatgattctaaccgccgctaacattctgcaat 5052842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 31288596 - 31288530
Alignment:
Q  129 ttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||  |||||||| ||| | ||||||||||||||||| |||||| ||| |||||||||||    
T  31288596 ttgactgttacataattccaacaattaaatagaggggattcaaataatcctaaccgccgctaacatt 31288530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 5851201 - 5851133
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||| |||||||| ||| |  | ||||||||||| ||||||||| ||| |||||||||||    
T  5851201 acttgactgttaagtaattccaacaactagacagaggggattcgaagaatcctaaccgccgctaacatt 5851133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 17968714 - 17968793
Alignment:
Q  84 aacttatcacttaaattggtaccatttaacaaatctctgaataacttgactgttaattaattccatcaaatgaatagagg 163  Q
    ||||||||||| |||| | ||||||||||| |||| || |||||||||| ||||| ||||||| |  |||| ||||||||    
T  17968714 aacttatcactaaaatggttaccatttaaccaatccctaaataacttgattgttacttaattcaaataaataaatagagg 17968793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 26008303 - 26008244
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    |||||||||| || ||||||||||||||||||||||| |||| | ||||  |||||||||    
T  26008303 ttaattaatttcaacaaatgaatagaggggattcaaaaaatcttaaccattgctaacatt 26008244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 9642131 - 9642088
Alignment:
Q  132 actgttaattaattccatcaaatgaatagaggggattcaaagaat 176  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||||    
T  9642131 actgttatttaattccaacaaatgaatag-ggggattcaaagaat 9642088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 17965302 - 17965222
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||||||||||||||||||| |||||  |||||| |||||  |||||||   ||| || |||||||| |||||| ||||    
T  17965302 acttgactgttaattaattccaacaaatagatagagaggatttgaagaatctcaaccgcccctaacattctgcaatcaaaa 17965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 24306793 - 24306890
Alignment:
Q  136 ttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgttacttctaaacttttgctctg 234  Q
    |||||||||| || ||||| |||| ||||||||||||||||||| |||  |||||||||||| ||||  |||||| |||||||||||||| ||||||||    
T  24306793 ttaattaatttcaacaaattaatataggggattcaaagaatcctaaccgtcgctaacatttttcaat-caaaacaggttacttctaaactcttgctctg 24306890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 17837772 - 17837720
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  17837772 acttgactgttaattaattccaacaaatggatagaggggattcaaagaatcct 17837720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 24267622 - 24267702
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    |||||| | ||||||||||||| ||||| |||||||||||||||||||||||| |||  |||||||||| |||||| ||||    
T  24267622 acttgattattaattaattccaacaaattaatagaggggattcaaagaatcctaaccgtcgctaacattctgcaatcaaaa 24267702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 33712937 - 33712832
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaacacgtt-acttctaaact 225  Q
    |||||||  ||||||| |||||  | ||||||||||||||||||||||| ||| |||| |||||||||| |||||| |||| || ||| ||| |||||||    
T  33712937 acttgaccattaattatttccaatagatgaatagaggggattcaaagaaccctaaccatcgctaacattctgcaatcaaaaccaggttaactcctaaact 33712838  T
Q  226 tttgct 231  Q
     |||||    
T  33712837 cttgct 33712832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 6501395 - 6501473
Alignment:
Q  129 ttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||| |||  ||| ||| | |||||||||||||| ||||||| | ||| ||||||||||| |||||| ||||    
T  6501395 ttgactgttaagtaaacccaacaactaaatagaggggattcgaagaatcataaccgccgctaacattctgcaattaaaa 6501473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 19369 - 19294
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaat 202  Q
    |||||| ||||| |||||| || ||||| |||||||||||||||||||||| | ||| ||||||||||||||||||    
T  19369 acttgaatgttatttaatttcaacaaataaatagaggggattcaaagaatcataaccgccgctaacattttgcaat 19294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 439 - 502
Alignment:
Q  132 actgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| |   |||||||||||    
T  439 actgttaattaattccaacaaaggaatagaggggattcaaagaatcctaagtgccgctaacatt 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 1990 - 1938
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||| ||||||||||||||| ||||| |||| |||||||||||||||||||    
T  1990 acttgaatgttaattaattccaacaaattaataaaggggattcaaagaatcct 1938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 4326 - 4378
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcct 179  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  4326 acttgactattaattaattccagcaaataaataggggggattcaaagaatcct 4378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 13753 - 13816
Alignment:
Q  131 gactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacatt 195  Q
    ||||| ||| |||||||| ||||||||||  |||||| | ||||||||| |||||||||||||||    
T  13753 gactgctaaataattccaacaaatgaataacggggat-cgaagaatcctaaccaccgctaacatt 13816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 15306 - 15386
Alignment:
Q  127 acttgactgttaattaattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaa 207  Q
    ||||||||||||| |||||||| |||   | |||||| ||||| ||||||||| |||  |||||||||| |||||| ||||    
T  15306 acttgactgttaaataattccaacaaccaagtagaggagattcgaagaatcctaaccgtcgctaacattctgcaatcaaaa 15386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 22474 - 22406
Alignment:
Q  141 taattccatcaaatgaatagaggggattcaaagaatcctgaccaccgctaacattttgcaataaaaaac 209  Q
    ||||| || |||||||||||||||||||| ||||||||| ||  ||| ||||| | |||||| ||||||    
T  22474 taatttcaacaaatgaatagaggggattcgaagaatccttactgccgataacaatctgcaatcaaaaac 22406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University