View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_21 (Length: 254)
Name: NF4645_low_21
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 52760732 - 52760953
Alignment:
| Q |
12 |
agcagagactaaactagagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760732 |
agcagagactaaactagagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaa |
52760831 |
T |
|
| Q |
112 |
acaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctggagcatgcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760832 |
acaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctggagcatgcg |
52760931 |
T |
|
| Q |
212 |
ttttagtaacacttggcgccga |
233 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
52760932 |
ttttagtaacacttggcgccga |
52760953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 52796987 - 52796883
Alignment:
| Q |
104 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
203 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||| ||| |||||| | ||||||| ||||||||||| ||| ||| ||||||||||| || |
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| T |
52796987 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggacttggtgaagg |
52796888 |
T |
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| Q |
204 |
agcat |
208 |
Q |
| |
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||||| |
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|
| T |
52796887 |
agcat |
52796883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 52798882 - 52798774
Alignment:
| Q |
99 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggt |
198 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||| | | |||| || |||||||||| || | |||||| ||||| | |||||| || |
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| T |
52798882 |
aacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatgtttaggactaggc |
52798783 |
T |
|
| Q |
199 |
gctggagca |
207 |
Q |
| |
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|| |||||| |
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| T |
52798782 |
gccggagca |
52798774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 38710644 - 38710731
Alignment:
| Q |
99 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatga |
186 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||| |||||| |||||| |
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| T |
38710644 |
aacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
38710731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 42094276 - 42094344
Alignment:
| Q |
99 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaa |
167 |
Q |
| |
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||||||||||||| ||| ||||||||| ||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
42094276 |
aacattctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaa |
42094344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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