View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_24 (Length: 246)
Name: NF4645_low_24
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 45093717 - 45093503
Alignment:
| Q |
1 |
acagcacattatgaaacacaatcaacaaatataaaagacatttttatcaacaaaaattgatgtatttagtccaactttttaatc------aaatacagtt |
94 |
Q |
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| T |
45093717 |
acagctcattatgaaacacaatcaacaaatatagaagacatttttgtcaacaaaaattgatatatttagtccaactttttaatcagatataaatacagta |
45093618 |
T |
|
| Q |
95 |
aatat---ttgacctaaatttttc---taaataggatggagggaggaagtattgactaatcatctacccaannnnnnnnactaaaatcatctacttaact |
188 |
Q |
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| T |
45093617 |
aatatttgttgatctaaatttttcttataaataggatggagggaggaagtatttactaatcatctacccaattttttttactaaaatcatctacttaact |
45093518 |
T |
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| Q |
189 |
taactaattgtccat |
203 |
Q |
| |
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||||||||||||||| |
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| T |
45093517 |
taactaattgtccat |
45093503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 45093490 - 45093458
Alignment:
| Q |
204 |
aaatttctaccttaaaatatgatttcccctatg |
236 |
Q |
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| T |
45093490 |
aaatatctaccttaaaatatgatttcccctatg |
45093458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 46330967 - 46330912
Alignment:
| Q |
30 |
tataaaagacatttttatcaacaaaaattgatgtatttagtccaactttttaatca |
85 |
Q |
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| T |
46330967 |
tataaaagacatttaaatcaacaaaaattgatatatttagtctaaattttgaatca |
46330912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 3079620 - 3079657
Alignment:
| Q |
30 |
tataaaagacatttttatcaacaaaaattgatgtattt |
67 |
Q |
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| T |
3079620 |
tataaaagatatttttatcaataaaaattgatgtattt |
3079657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 3564275 - 3564222
Alignment:
| Q |
36 |
agacatttttatcaacaaaaattgatgtatttagtccaactttttaatcaaata |
89 |
Q |
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| T |
3564275 |
agacatttgaatcaacaaaggttgatgtatttgatccaactttttaatcaaata |
3564222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 40676816 - 40676869
Alignment:
| Q |
38 |
acatttttatcaacaaaaattgatgtatttagtccaactttttaatcaaataca |
91 |
Q |
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| T |
40676816 |
acattttggtcaacaaaaatggatgtatttagtccaatttgttaatcatataca |
40676869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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