View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_25 (Length: 244)
Name: NF4645_low_25
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 44622786 - 44623025
Alignment:
| Q |
2 |
catcagaaacatcctgatctgttcgagctactaaagctccaactgaaaacatgcgctttttgagtgattgtttggaaaccaggggttttgcttcagatcg |
101 |
Q |
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| T |
44622786 |
catcagaaacatcctgatctgttcgagctactaaagctcccactgaaaacatgcgctttttgagtgattgtttggaaaccaggggttttgcttcagatcg |
44622885 |
T |
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| Q |
102 |
cagtgaagaaaaactagctgctatgtaatttttcacaggattagagttaacagaagcctccacataagctccagagcataaggacnnnnnnngagaggta |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
44622886 |
cagtgaagaaaaactagctgctatgtaatttttcacaggattagagttaacagaagcctccacatgagctccagagcataaggactttttttgagaggta |
44622985 |
T |
|
| Q |
202 |
cagattgcctgtggcgacagcctgcaaaagtaagtataat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
44622986 |
cagattgcctgtggcgacagcctgcaaaagtaagtataat |
44623025 |
T |
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