View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_26 (Length: 239)

Name: NF4645_low_26
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_26
NF4645_low_26
[»] chr4 (3 HSPs)
chr4 (1-130)||(3187819-3187948)
chr4 (128-222)||(5878214-5878308)
chr4 (130-222)||(5874857-5874949)
[»] chr7 (2 HSPs)
chr7 (128-222)||(11851518-11851612)
chr7 (155-222)||(11847161-11847228)
[»] chr1 (1 HSPs)
chr1 (130-222)||(51189751-51189843)
[»] chr5 (1 HSPs)
chr5 (130-222)||(38296783-38296874)
[»] chr2 (2 HSPs)
chr2 (130-222)||(15592013-15592098)
chr2 (157-222)||(15601006-15601071)
[»] chr8 (2 HSPs)
chr8 (130-222)||(14655575-14655667)
chr8 (155-222)||(20049393-20049460)
[»] chr3 (1 HSPs)
chr3 (128-220)||(2774581-2774672)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 3187819 - 3187948
Alignment:
Q  1 taagaaattatcaatggttgatacttaatcatgcacctagttgggaacttaacaacactggtataactaggacacaattccctcaaaacgttagcctttc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||     
T  3187819 taagaaattatcaatgattgatacttaatcatgcacctagttggggacttaacaacactagtataactaggacacaattccctcaaaacgttagtctttg 3187918  T
Q  101 agatttccttcatcttttacatgtataaat 130  Q
    ||||||||||||||||||||||||||||||    
T  3187919 agatttccttcatcttttacatgtataaat 3187948  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 5878214 - 5878308
Alignment:
Q  128 aatgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5878214 aatgttagattatgttgtggttatatttaatctatttctattattaggaagtatgacttagtttttctcttgagacatagtctacacattataag 5878308  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 5874857 - 5874949
Alignment:
Q  130 tgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5874857 tgttagattatgttgtggttatatttaatctatttctattattaggaagtatgacttagtttttctcttgagacatagtctacacattataag 5874949  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 11851518 - 11851612
Alignment:
Q  128 aatgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11851518 aatgttagattattttgtggttatatttaatctatttctattattaggaagtatgacttagtttttctcttgagacatagtctacacattataag 11851612  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 11847161 - 11847228
Alignment:
Q  155 taatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11847161 taatctatttctgttattaggaagtatgacttagtttttctcttgagacatagtctacacattataag 11847228  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 51189751 - 51189843
Alignment:
Q  130 tgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  51189751 tgttagattatgttgtggttatatttaatctatttctattattaggaagtatgacttagtttttctcttgggacatagtctacacattataag 51189843  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 38296783 - 38296874
Alignment:
Q  130 tgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||    
T  38296783 tgttagattatgttgtggttatatttaatatatttctattattaggaagtatgacttag-ttttctcttggaacatagtctacacattataag 38296874  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 15592013 - 15592098
Alignment:
Q  130 tgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15592013 tgttagattatgttgtggttat-------ctatttctattattaggaagtatgacttagtttttctcttgagacatagtctacacattataag 15592098  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 15601006 - 15601071
Alignment:
Q  157 atctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15601006 atctatttctattattaggaagtatgacttagtttttctcttgagacatagtctacacattataag 15601071  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 14655667 - 14655575
Alignment:
Q  130 tgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    ||||| |||||  ||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  14655667 tgttaaattattgtgtggttatgtttaatttatttctattattaggaagtatgacttagtttttcttttgggacatagtctacacattataag 14655575  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 20049460 - 20049393
Alignment:
Q  155 taatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattataag 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  20049460 taatttatttctattattaggaagtatgacttagtttttctcttgggacatagtctgcacattataag 20049393  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 2774581 - 2774672
Alignment:
Q  128 aatgttagattatgttgtggttatatgtaatctatttctattattaggaagtatgacttagtttttctcttgagacatagactacacattata 220  Q
    ||||||| |||||  ||||||||| | |||| | ||| |||||||||||||||||||||||  |||||||| | |||||| | ||||||||||    
T  2774581 aatgttaaattattgtgtggttatgtttaatttgtttatattattaggaagtatgacttag-ctttctcttcaaacatagtcgacacattata 2774672  T

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