View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_29 (Length: 236)
Name: NF4645_low_29
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 16699185 - 16699404
Alignment:
| Q |
1 |
caaacattgcttggcatgaaagtgagtccaagttgttattgtttcttgaaattgttgtgttcgttgagggaaaaaatgattcaatcttaacaatcccttt |
100 |
Q |
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| T |
16699185 |
caaacattgcttggcatgaaagtgagtccaagttgttattgtttcttgaaattgttgtgttcgttgagggaaagaatgattcaatcttaacaatcccttt |
16699284 |
T |
|
| Q |
101 |
tgctttgtagattggtttaattttgttcaaaatgtagtcttgtgaaaccttgttcggtaccctcacaattggtgtgcttctagtagacacttgaggaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16699285 |
tgctttgtagattggtttaattttgttcaaaatgtagtcttgtgataccttgttaggtaccctcacaattggtgtgcttctagtagacacttgaggaggt |
16699384 |
T |
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| Q |
201 |
agtgtttttgttactttcac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
16699385 |
agtgtttttgttactttcac |
16699404 |
T |
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