View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_3 (Length: 494)
Name: NF4645_low_3
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 257 - 485
Target Start/End: Complemental strand, 44075697 - 44075469
Alignment:
| Q |
257 |
aattgaatcagttacgatacatttacagagttttaaatcaaaattaatttaaacaccaatgttaacttctcttagaatgagagtattatacaaattccac |
356 |
Q |
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| T |
44075697 |
aattgaatcagttacgatacatttacagagttttaaatcaaaattaatttaaacaccaatgttaacttctcttagaatgagagtattatacaaattccac |
44075598 |
T |
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| Q |
357 |
ttctggatagaaaacatgcttcatgaatctattgttaatgaactttgacatctacaagtttgttttctcttccaaattcataataaaactagcatgtaat |
456 |
Q |
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| T |
44075597 |
ttctggatagaaaacatgcttcatgaatctattgttaatgaaatttgacatctacaagtttgttttctcttccaaattcataataaaactagcatgtaat |
44075498 |
T |
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| Q |
457 |
atgctttgagtccaatttcacacaggttc |
485 |
Q |
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| T |
44075497 |
atgctttgagtccaatttcacacaggttc |
44075469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 44087852 - 44087812
Alignment:
| Q |
19 |
taaacgactctttatgcacatcttccagtgttgtatcaatt |
59 |
Q |
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| T |
44087852 |
taaacgactatttatgcacatcttccagtgttgtatcaatt |
44087812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 44067812 - 44067773
Alignment:
| Q |
50 |
tgtatcaattcttagagacttgaaatcgttcatcaatttt |
89 |
Q |
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| T |
44067812 |
tgtatcaattcttagagacttgaaattgttcatcaatttt |
44067773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 44079828 - 44079789
Alignment:
| Q |
50 |
tgtatcaattcttagagacttgaaatcgttcatcaatttt |
89 |
Q |
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| T |
44079828 |
tgtatcaattcttagagtcttgaaatcgttcatcaatttt |
44079789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 44079875 - 44079841
Alignment:
| Q |
18 |
ataaacgactctttatgcacatcttccagtgttgt |
52 |
Q |
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| T |
44079875 |
ataaacgactctttatgcacatcttccactgttgt |
44079841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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