View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_32 (Length: 226)

Name: NF4645_low_32
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_32
NF4645_low_32
[»] chr5 (7 HSPs)
chr5 (20-208)||(4236155-4236343)
chr5 (15-199)||(20685182-20685367)
chr5 (10-96)||(24166582-24166669)
chr5 (35-97)||(19222231-19222293)
chr5 (34-96)||(23029274-23029336)
chr5 (125-206)||(12685690-12685770)
chr5 (134-200)||(42687541-42687607)
[»] chr1 (8 HSPs)
chr1 (15-202)||(7839485-7839673)
chr1 (15-203)||(17734841-17735030)
chr1 (35-97)||(2130266-2130328)
chr1 (35-97)||(15421417-15421479)
chr1 (152-206)||(21924812-21924866)
chr1 (154-207)||(8236400-8236453)
chr1 (35-97)||(16527360-16527422)
chr1 (34-93)||(20860399-20860459)
[»] chr7 (12 HSPs)
chr7 (32-202)||(1751147-1751321)
chr7 (35-203)||(35103852-35104020)
chr7 (15-206)||(6531416-6531608)
chr7 (35-206)||(1941461-1941633)
chr7 (35-97)||(1864621-1864683)
chr7 (16-96)||(679182-679262)
chr7 (35-97)||(14925834-14925896)
chr7 (35-97)||(15349300-15349362)
chr7 (34-96)||(15523348-15523410)
chr7 (159-206)||(11242618-11242665)
chr7 (160-206)||(6712334-6712380)
chr7 (15-95)||(4465471-4465552)
[»] chr4 (17 HSPs)
chr4 (15-206)||(15048001-15048193)
chr4 (15-206)||(15106231-15106423)
chr4 (15-189)||(36709461-36709635)
chr4 (15-206)||(17295386-17295575)
chr4 (125-206)||(26493211-26493292)
chr4 (35-97)||(24493263-24493325)
chr4 (35-97)||(55268092-55268154)
chr4 (154-206)||(21276775-21276827)
chr4 (15-122)||(22809239-22809346)
chr4 (35-97)||(4743102-4743164)
chr4 (35-97)||(17465158-17465220)
chr4 (154-206)||(17464992-17465044)
chr4 (160-206)||(12347523-12347569)
chr4 (34-96)||(17169107-17169169)
chr4 (34-96)||(17174667-17174729)
chr4 (35-97)||(26493064-26493126)
chr4 (13-70)||(12634250-12634307)
[»] chr2 (10 HSPs)
chr2 (13-206)||(23482655-23482849)
chr2 (15-122)||(29951866-29951973)
chr2 (34-96)||(24371146-24371208)
chr2 (15-206)||(36129843-36130036)
chr2 (154-206)||(21511820-21511872)
chr2 (35-97)||(35406740-35406802)
chr2 (36-97)||(21511645-21511706)
chr2 (15-98)||(13004748-13004831)
chr2 (36-97)||(21516124-21516185)
chr2 (154-206)||(21516299-21516351)
[»] scaffold0148 (1 HSPs)
scaffold0148 (15-206)||(12730-12922)
[»] chr6 (7 HSPs)
chr6 (15-139)||(31817602-31817727)
chr6 (10-85)||(34108717-34108792)
chr6 (34-95)||(29682928-29682989)
chr6 (160-208)||(23523836-23523884)
chr6 (10-96)||(18973977-18974064)
chr6 (160-206)||(13168526-13168572)
chr6 (34-96)||(31965218-31965280)
[»] chr8 (5 HSPs)
chr8 (15-98)||(18572058-18572141)
chr8 (13-122)||(25431783-25431892)
chr8 (156-206)||(9798365-9798415)
chr8 (160-206)||(31469554-31469600)
chr8 (13-98)||(24887260-24887347)
[»] chr3 (7 HSPs)
chr3 (56-200)||(11271477-11271621)
chr3 (13-97)||(6461691-6461775)
chr3 (13-97)||(11271636-11271720)
chr3 (34-97)||(27992194-27992257)
chr3 (10-96)||(9762307-9762393)
chr3 (152-206)||(14347963-14348017)
chr3 (160-206)||(20225122-20225168)
[»] scaffold0855 (1 HSPs)
scaffold0855 (10-96)||(3789-3875)
[»] scaffold0847 (1 HSPs)
scaffold0847 (10-96)||(3954-4040)
[»] scaffold0074 (1 HSPs)
scaffold0074 (10-96)||(22418-22505)
[»] scaffold0001 (2 HSPs)
scaffold0001 (34-96)||(33197-33260)
scaffold0001 (34-96)||(38504-38567)
[»] scaffold0098 (1 HSPs)
scaffold0098 (10-64)||(4488-4542)
[»] scaffold0094 (1 HSPs)
scaffold0094 (160-206)||(1802-1848)
[»] scaffold0014 (1 HSPs)
scaffold0014 (34-96)||(168513-168575)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 4236343 - 4236155
Alignment:
Q  20 tcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatgatgag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4236343 tcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatgatgag 4236244  T
Q  120 attggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaaaa 208  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4236243 attagttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtgattagactcgtccaacaatcccaaaa 4236155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 20685367 - 20685182
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||    
T  20685367 tattctcatgttttactcaccttgtctaatctcattagttctaatatcaatcttcatttttcgatccttcgattgatatttgaaatatgacttaaaaatg 20685268  T
Q  115 atgagatt-ggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaaca 199  Q
    |||||||| | ||||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| || |||||||    
T  20685267 atgagattagattagaaaacaaatttaaataaaacaaagttctagacttggcttgaataggatttagtcattagaatcatccaaca 20685182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 24166669 - 24166582
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatcaa-tcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||||||||||  |   ||||||||||| ||| |||||| |||||||| |||||||||||| |||||||| ||||||||||    
T  24166669 tagattattctcatgtttcgcaatccttgtctaatttcacttgttccaatatcaaatcttcatctttcgatccttcgcttgatatttg 24166582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 19222293 - 19222231
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| ||||||||| | |||||||| |||||||||||    
T  19222293 cttgtctaatttcatttgttccaatatcaaacttcatcttccgatccttcgtttgatatttga 19222231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 23029274 - 23029336
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||| |||  ||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  23029274 ccttgtctaatttcacctgttccaatatcaaacttcatctttcgatccttcgcttgatatttg 23029336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 12685690 - 12685770
Alignment:
Q  125 ttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||| |||||||||||||| | | |||||||||||  ||||||| |||| | |||||||| | |||||||||||||||    
T  12685690 ttagaaaaagaatttaaataaaataga-ttttagacttgggttgaatatgattcaatcattagattagtccaacaatcccaa 12685770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 42687541 - 42687607
Alignment:
Q  134 gaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaa 200  Q
    |||||||||||||| | |  | |||||||| ||||||||||||||| ||||||||||  ||||||||    
T  42687541 gaatttaaataaaatagatatctagacttggtttgaataggatttaatcattagactattccaacaa 42687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 7839673 - 7839485
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    ||||| |||||||| |||||||| |||||||||| |||||||||||||||||||||||||   ||||||| ||||||||||||| ||  |||||||||||    
T  7839673 tattcacatgttttgctcaccttatctaatctcatttgttctaatatcaatcttcatcttgtgatccttcaattgatatttgaaatacgacttaaaaatg 7839574  T
Q  115 atgagatt-ggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatc 202  Q
    |||||||| | ||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||| |||||| |||  ||||||||||    
T  7839573 atgagattagattagaaaacaaatttaaataaaacaaagttctagacttgacttgaataagatttaatcattaaacttatccaacaatc 7839485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 17734841 - 17735030
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||||| || |||||||||||||||||  ||| |||||||||||    
T  17734841 tattctcatgttttgctcaccttgtctaagctcatttgttctaatatcagtctttatctttcgatacttcgattgatatttgatatatgacttaaaaatg 17734940  T
Q  115 atgagatt-ggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcc 203  Q
    |||||||| | |||||||| ||||||| ||| || || ||  |||||||| ||||||||||||||||||||||||||  | |||||||||    
T  17734941 atgagattagattagaaaaagaatttagatataataaggtcctagacttggtttgaataggatttagtcattagactatttcaacaatcc 17735030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 2130328 - 2130266
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  2130328 cttgtctaatttcatttgttccaatatcaaacttcatctttcgatccttcgtttgatatttga 2130266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 15421479 - 15421417
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| ||||||||||| |||||||| || ||||||||    
T  15421479 cttgtctaatttcatttgttccaatatcaaacttcatctttcgatccttcgtttcatatttga 15421417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 21924866 - 21924812
Alignment:
Q  152 gttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    ||||||| |||| ||||||||||||| ||||||||||||| || |||||||||||    
T  21924866 gttttaggcttggtttgaataggattaagtcattagactcatctaacaatcccaa 21924812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 8236453 - 8236400
Alignment:
Q  154 tttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaaa 207  Q
    |||||||||| |||||||| |||| ||||||||||||  |||||||||||||||    
T  8236453 tttagacttggtttgaataagattaagtcattagactattccaacaatcccaaa 8236400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 16527360 - 16527422
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| || ||||| ||||||||||| ||| |||| |||||||||||    
T  16527360 cttgtctaatttcatttgttccaaaatcaaacttcatctttcgatcattcgtttgatatttga 16527422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 20860399 - 20860459
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaat-cttcatctttcaatccttcgattgatat 93  Q
    ||||||||||| ||| |||||| ||||||||  ||||||||||| |||||||| |||||||    
T  20860399 ccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatccttcgcttgatat 20860459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 1751321 - 1751147
Alignment:
Q  32 caccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatgatgagattggttagaaa 131  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| | |||||||    
T  1751321 caccttatctaatctcatttgttctaatatcaatcttcatctttcgatcctttgattgatatttgaaatataacttaaaaatgatgagatagattagaaa 1751222  T
Q  132 acgaatttaaataaaacaaagt----tttagacttgatttgaataggatttagtcattagactcgtccaacaatc 202  Q
    ||||||||||| |||| ||| |      ||||||||  |||||||||||||||||||||||| | ||||||||||    
T  1751221 acgaatttaaaaaaaaaaaattaataaatagacttggcttgaataggatttagtcattagacccatccaacaatc 1751147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 35103852 - 35104020
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatgatgagatt-ggttagaaaac 133  Q
    ||||||||||| || |||||| |||||||||||||||||||| |||| | |||||||||||||| ||| | |||||| ||| |||||| | ||||||||     
T  35103852 cttgtctaatcacatttgttccaatatcaatcttcatctttcgatccattgattgatatttgaaatatgaattaaaagtgacgagattagattagaaaat 35103951  T
Q  134 gaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcc 203  Q
    ||||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||| |||||||||||    
T  35103952 gaatttaaataaaactaagttttaggcttggtttg-ataggatttagtcattagactcatccaacaatcc 35104020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 6531608 - 6531416
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactata-acttaaaaat 113  Q
    |||||||||||||| |  ||||||||||||||||  || ||||||||||||||||||||||| |||| |||||||||||||||| ||||   ||||||      
T  6531608 tattctcatgttttgcaaaccttgtctaatctcatctgatctaatatcaatcttcatctttcgatccatcgattgatatttgaaatatatttttaaaagc 6531509  T
Q  114 gatgagatt-ggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
     |||||||| | ||||||||| ||  ||||||| | |||||| ||||||||  |||||||| ||||||||||||||||  ||||||||||||||    
T  6531508 tatgagattagattagaaaac-aaagtaaataagataaagttctagacttggcttgaatagaatttagtcattagacttatccaacaatcccaa 6531416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 1941461 - 1941633
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatgatgagattgg-ttagaaaac 133  Q
    |||||||||||||| ||||||||| ||||| ||||| |||||  | ||||| |||||||||||  ||  |||||||||  || |||||   ||||||||     
T  1941461 cttgtctaatctcatttgttctaaaatcaaacttcacctttcggtacttcgtttgatatttgatataagacttaaaaacaatcagattatattagaaaaa 1941560  T
Q  134 gaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||||||||| |||||| || ||||| ||||||||| ||| |||||||| |||  ||||||||||||||    
T  1941561 gaatttaaataaaataaagttctaaacttggtttgaatagaattcagtcattaaactattccaacaatcccaa 1941633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 1864683 - 1864621
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  1864683 cttgtctaatttcatttgttccaatatcaaacttcatctttcgatccttcgtttgatatttga 1864621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 679182 - 679262
Alignment:
Q  16 attctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    |||||||||||| ||   ||||||||||| ||| |||||| | |||||| ||||||||||| |||||||| ||||||||||    
T  679182 attctcatgtttcacaatccttgtctaatttcacttgttccagtatcaaacttcatctttcgatccttcgcttgatatttg 679262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 14925896 - 14925834
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  14925896 cttgtctaatatcatttgttccaatattaaacttcatctttcgatccttcgtttgatatttga 14925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 15349362 - 15349300
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  15349362 cttgtctaatatcatttgttccaatattaaacttcatctttcgatccttcgtttgatatttga 15349300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 15523410 - 15523348
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||| | ||| |||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  15523410 ccttgtctactttcacttgttccaatatcaaacttcatctttcgatccttcgcttgatatttg 15523348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 11242665 - 11242618
Alignment:
Q  159 acttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||||||||    
T  11242665 acttggtttgaataggattaagtcattagactattccaacaatcccaa 11242618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 6712334 - 6712380
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  6712334 cttggtttgaataggattaggtcattagactcatccaacaatcccaa 6712380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 4465471 - 4465552
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaat-cttcatctttcaatccttcgattgatattt 95  Q
    |||| |||||||||||   ||||||||||| ||| |||||| ||||| ||  ||||||||||| |||||||| |||||||||    
T  4465471 tattttcatgttttacaatccttgtctaatttcacttgttccaatattaaaacttcatctttcgatccttcgcttgatattt 4465552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 15048001 - 15048193
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    ||||||||||||||  ||| || ||||||||||| ||||||||||||||||||||| ||||   | |||||||||||||||||  ||  ||||||||||     
T  15048001 tattctcatgttttcttcatctcgtctaatctcatttgttctaatatcaatcttcacctttgggtacttcgattgatatttgatataagacttaaaaatt 15048100  T
Q  115 atgagattgg-ttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||| | |||||||| |||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  15048101 atgagattagattagaaaaagaatttaaataaaataaggttctagacttggtttgaataggatttagtcattagactattccaacaatcccaa 15048193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 15106423 - 15106231
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    ||||||||||||||  ||| || ||||||||||| ||||||||||||||||||||| ||||   | |||||||||||||||||  ||  ||||||||||     
T  15106423 tattctcatgttttcttcatctcgtctaatctcatttgttctaatatcaatcttcacctttgggtacttcgattgatatttgatataagacttaaaaatt 15106324  T
Q  115 atgagattgg-ttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||| | |||||||| |||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  15106323 atgagattagattagaaaaagaatttaaataaaataaggttctagacttggtttgaataggatttagtcattagactattccaacaatcccaa 15106231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 36709461 - 36709635
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    ||||||||||||||  |||||||  ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||    
T  36709461 tattctcatgttttgttcaccttaactaatatcatttgttctaatatcaatcttcatctttcgatccttcgattgatatttgaaatatgacttaaaaatg 36709560  T
Q  115 atgagatt-ggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagac 189  Q
    ||||||||   |||||||| |||||||||||||  ||  || |||||||| |||||||||||||||||||||||||    
T  36709561 atgagattatattagaaaa-gaatttaaataaactaagattctagacttggtttgaataggatttagtcattagac 36709635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 17295386 - 17295575
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||| || || ||||||||| ||| |||||| |||| | ||||||| ||||| ||| |||||||| |||||||| ||| ||||||| ||     
T  17295386 tattctcatgttttgcttactttgtctaatttcatttgttccaataacgatcttcaactttcgatctttcgattgttatttgaaatatgacttaaagatt 17295485  T
Q  115 atgagattggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||| | ||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17295486 atgagattagatagaaaa-gaatttaaatagaaaaaagttctagacttgatttgaataggatttagtcattagac-cttccaacaatcccaa 17295575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 26493211 - 26493292
Alignment:
Q  125 ttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    ||||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||| |||||||| ||||| ||||||||    
T  26493211 ttagaaaacaaatttaaataaaacaaagttctagacttggcttgaataggatttagtccttagactcatccaataatcccaa 26493292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 24493325 - 24493263
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| |||||||||||||||||||| |||||||||||    
T  24493325 cttgtctaatttcatttgttccaatatcaaacttcatctttcaatccttcgtttgatatttga 24493263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 55268154 - 55268092
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  55268154 cttgtctaatttcatttgttccaatatcaaacttcatctttcgatccttcgtttgatatttga 55268092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 21276827 - 21276775
Alignment:
Q  154 tttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||||| ||||||||||||| ||||||||||||  ||||||||||||||    
T  21276827 tttagacttggtttgaataggattaagtcattagactattccaacaatcccaa 21276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22809239 - 22809346
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||| |  |||||||||||||||| || ||| ||||  || ||||||||||| ||||||| |||  |||||||| ||| | ||||| |||    
T  22809239 tattctcatgttttgcaaaccttgtctaatctcacttcttccaatactaaccttcatctttcgatccttcaattagtatttgaaatatgaattaaagatg 22809338  T
Q  115 atgagatt 122  Q
     |||||||    
T  22809339 gtgagatt 22809346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 4743164 - 4743102
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| |||||| |||||||| ||||||||||  |||||||| |||||||||||    
T  4743164 cttgtctaatttcatttgttccaatatcaaacttcatcttttgatccttcgtttgatatttga 4743102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 17465220 - 17465158
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||| ||| || ||| |||||||| |||||||||||||||||||  |||||||||||    
T  17465220 cttgtctaatttcatttattccaatatcaaacttcatctttcaatccttcatttgatatttga 17465158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 17465044 - 17464992
Alignment:
Q  154 tttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||||| |||||||| |||| ||||||||||||  ||||||||||||||    
T  17465044 tttagacttggtttgaataagattaagtcattagactattccaacaatcccaa 17464992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 12347569 - 12347523
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  12347569 cttggtttgaataggattaggtcattagactcatccaacaatcccaa 12347523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 17169169 - 17169107
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||  ||| || ||| |||||||| ||||||||||| |||||||| ||||||||||    
T  17169169 ccttgtctaaattcacttattccaatatcaaacttcatctttcgatccttcgcttgatatttg 17169107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 17174729 - 17174667
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||  ||| || ||| |||||||| ||||||||||| |||||||| ||||||||||    
T  17174729 ccttgtctaaattcacttattccaatatcaaacttcatctttcgatccttcgcttgatatttg 17174667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 26493064 - 26493126
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    ||||||||||| || |||||  |||||||| ||||||||||| |||| ||| |||||||||||    
T  26493064 cttgtctaatcacatttgtttcaatatcaaacttcatctttcgatccatcggttgatatttga 26493126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 12634250 - 12634307
Alignment:
Q  13 attattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttca 70  Q
    |||| |||||||||||  | | |||||||||||||| ||||||||||||||| |||||    
T  12634250 attactctcatgttttgtttatcttgtctaatctcatttgttctaatatcaaacttca 12634307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 23482849 - 23482655
Alignment:
Q  13 attattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaa 112  Q
    |||||||||||||||| ||||||||| ||| ||| | ||||||||||||||||||||||||||| || |||| ||||||||||||  ||| |||||||||    
T  23482849 attattctcatgttttgctcaccttgcctactctgatttgttctaatatcaatcttcatctttcgatacttcaattgatatttgatatatgacttaaaaa 23482750  T
Q  113 tgatgagatt-ggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||| |||   |||||||| ||||||||| |||| ||  || |||||||| ||||||||| ||||||||||||||||  ||| ||||||||||    
T  23482749 tgatgatattatattagaaaaagaatttaaacaaaataattttgtagacttggtttgaatagaatttagtcattagactattcccacaatcccaa 23482655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 29951973 - 29951866
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||| |  |||||||||||||||| |||||||||||  || ||||||||||  ||||||| |||  |||||||| ||| | |||| || |    
T  29951973 tattctcatgttttgcaaaccttgtctaatctcacttgttctaatactaaccttcatcttttgatccttcaattagtatttgaaatatgaattaagaacg 29951874  T
Q  115 atgagatt 122  Q
    ||||||||    
T  29951873 atgagatt 29951866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 24371146 - 24371208
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||| ||| |||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  24371146 ccttgtctaatttcacttgttccaatatcaaacttcatctttcgatccttcgcttgatatttg 24371208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 36129843 - 36130036
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||| |  ||||||||| |||||| |||||||||||  |||||||| ||||| ||||||| |||  |||||||| ||| | |||| || |    
T  36129843 tattctcatgttttgcaaaccttgtctgatctcacttgttctaatactaatcttcacctttcgatccttcaattagtatttgaaatatgaattaagaacg 36129942  T
Q  115 atgagatt-ggttagaaaacgaatttaaataaaa-caaagttttagacttgatttgaataggattta-gtcattagactcgtccaacaatcccaa 206  Q
     ||||||| | ||||||||   ||||| ||||||  |  ||||| | |||| |||| |||||| ||| |||||||||||| ||||||||||||||    
T  36129943 gtgagattagattagaaaatatatttacataaaattagggtttttggcttggtttg-ataggaattaggtcattagactcatccaacaatcccaa 36130036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 21511820 - 21511872
Alignment:
Q  154 tttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||||| ||||||||||||| ||||||||||||  ||||||||||||||    
T  21511820 tttagacttggtttgaataggattaagtcattagactattccaacaatcccaa 21511872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 35406802 - 35406740
Alignment:
Q  35 cttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    ||||||||||||||  || ||||||||||| |||||||||||  ||||||| |||||||||||    
T  35406802 cttgtctaatctcatctgctctaatatcaaacttcatctttcggtccttcgtttgatatttga 35406740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 21511645 - 21511706
Alignment:
Q  36 ttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    ||||||||| ||| |||||| |||||||| ||||||||||| ||| |||| |||||||||||    
T  21511645 ttgtctaatttcatttgttccaatatcaaacttcatctttcgatcattcgtttgatatttga 21511706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 13004831 - 13004748
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaa 98  Q
    ||||||||||||| |   |||||||||||||||| |||||| ||||  || ||||||||||| ||||||| |||  ||||||||    
T  13004831 tattctcatgtttcataaaccttgtctaatctcacttgttccaatactaaccttcatctttcgatccttcaattagtatttgaa 13004748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 21516124 - 21516185
Alignment:
Q  36 ttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    ||||||||| ||| || ||| |||||||| |||||| |||| |||||||| |||||||||||    
T  21516124 ttgtctaatttcatttattccaatatcaaacttcatttttcgatccttcgtttgatatttga 21516185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 21516299 - 21516351
Alignment:
Q  154 tttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||||  ||| ||||||||| ||||||||||||  ||||||||||||||    
T  21516299 tttagacttcctttaaataggattaagtcattagactattccaacaatcccaa 21516351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 12922 - 12730
Alignment:
Q  15 tattctcatgttttactcaccttgtctaat-ctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataactta--aaa 111  Q
    ||||||||| |||| || || ||||||||| |||| |||||| |||| ||||||||||||||| |||||| ||||| |||||||| |||||||||  |||    
T  12922 tattctcatattttgcttactttgtctaattctcatttgttccaataacaatcttcatctttcgatcctttgattgttatttgaaatataacttaaaaaa 12823  T
Q  112 atgatgagattggttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    || |||||||| | ||||||| ||||||||||| || || ||| |||||||| ||||||||||||||||||| | ||| | ||||||||||||||    
T  12822 attatgagattagatagaaaa-gaatttaaatagaaaaaggttctagacttggtttgaataggatttagtcagtggac-cttccaacaatcccaa 12730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 31817602 - 31817727
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatg 114  Q
    |||||||||||||| || | ||| |||||||||| ||||||||||||||| ||||| |||||  ||||||| |||||||||||  |||| ||| ||||||    
T  31817602 tattctcatgttttgcttatcttctctaatctcatttgttctaatatcaaacttcacctttcggtccttcgtttgatatttgatatatagctttaaaatg 31817701  T
Q  115 atgagatt-ggttagaaaacgaattt 139  Q
    || ||||| | |||||||| ||||||    
T  31817702 ataagattagattagaaaatgaattt 31817727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 34108717 - 34108792
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcg 85  Q
    |||| |||||||||||||  |  |||||||||||| ||| |||||||||||| || ||||||||||| ||||||||    
T  34108717 tagactattctcatgtttatcaaaccttgtctaatgtcacttgttctaatattaaccttcatctttcgatccttcg 34108792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 29682989 - 29682928
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatattt 95  Q
    ||||||||||| ||| |||||| |||||||| ||||||||||| || ||||| |||||||||    
T  29682989 ccttgtctaatttcacttgttccaatatcaaacttcatctttcgatacttcgcttgatattt 29682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 23523836 - 23523884
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaaaa 208  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||||||    
T  23523836 cttggtttgattaggattaagtcattagactcatccaacaatcccaaaa 23523884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 18974064 - 18973977
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaata-tcaatcttcatctttcaatccttcgattgatatttg 96  Q
    |||||||||||||||||| |||  || |||||||| ||| |||||| |||| | || ||||||||||| || ||||| ||||||||||    
T  18974064 tagattattctcatgtttcactatccctgtctaatttcacttgttccaatattaaaacttcatctttcgattcttcgcttgatatttg 18973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 13168572 - 13168526
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  13168572 cttggtttgaataggattaggtcattagactcatccaacaatcccaa 13168526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 31965218 - 31965280
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||| ||| ||||| ||||||||| ||||||||||  ||| |||| ||||||||||    
T  31965218 ccttgtctaatttcacttgttttaatatcaaacttcatcttttgatcattcgcttgatatttg 31965280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 18572058 - 18572141
Alignment:
Q  15 tattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaa 98  Q
    |||||||||||||| |  |||||||||||||||| |||||||||||  |||||||||||||||||||||| |||  ||||||||    
T  18572058 tattctcatgttttgcaaaccttgtctaatctcacttgttctaatactaatcttcatctttcaatccttcaattagtatttgaa 18572141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 25431783 - 25431892
Alignment:
Q  13 attattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaa 112  Q
    |||||||||||||| | |  | |||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||  |||||||| ||| | |||| ||    
T  25431783 attattctcatgttgtgcaaaacttgtctaatctcacttgttctaataccaaccttcatctttcgatccttcgattagtatttgaaatatgaattaataa 25431882  T
Q  113 tgatgagatt 122  Q
    || |||||||    
T  25431883 tggtgagatt 25431892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 9798365 - 9798415
Alignment:
Q  156 tagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||||||||| ||||||||||| ||||||||||||  ||| ||||||||||    
T  9798365 tagacttgatctgaataggattaagtcattagactattccgacaatcccaa 9798415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 31469554 - 31469600
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  31469554 cttggtttgaataggattaggtcattagactcatccaacaatcccaa 31469600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 24887347 - 24887260
Alignment:
Q  13 attattctcatgttttactcaccttgtctaatctcaattgttctaatatc--aatcttcatctttcaatccttcgattgatatttgaa 98  Q
    |||||||||||||||| |  | ||| | |||||||| ||||||||||||   || ||||||||||| |||||||||||  ||||||||    
T  24887347 attattctcatgttttgcaaaacttttataatctcacttgttctaatatactaaccttcatctttcgatccttcgattagtatttgaa 24887260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 11271621 - 11271477
Alignment:
Q  56 taatatcaatcttcatctttcaatccttcgattgatatttgaactataacttaaaaatgatgagattgg-ttagaaaacgaatttaaataaaacaaagtt 154  Q
    ||||||||| ||||||||||| |||||||| ||||||||||   |  | |||||||||||||||||| | |||||||| |||||||||||||| | | ||    
T  11271621 taatatcaaacttcatctttcgatccttcgtttgatatttgttattaagcttaaaaatgatgagattagattagaaaaagaatttaaataaaataga-tt 11271523  T
Q  155 ttagacttgatttgaataggatttagtcattagactcgtccaacaa 200  Q
     ||||||| | |||||||||| | | |||||| | | |||||||||    
T  11271522 ctagacttcagttgaataggagtcaatcattatattagtccaacaa 11271477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 6461775 - 6461691
Alignment:
Q  13 attattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    |||||||||||||||   ||| | |||| ||||||| ||||||||||||||||||||| |||||  | |||||||||||||||||    
T  6461775 attattctcatgtttggttcatcatgtccaatctcatttgttctaatatcaatcttcacctttcggtacttcgattgatatttga 6461691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 11271720 - 11271636
Alignment:
Q  13 attattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    ||||||||||| ||||  | | |||||||||||||| ||| || |||||||| ||||||||||| |||||||  |||||||||||    
T  11271720 attattctcatattttgtttatcttgtctaatctcatttgatccaatatcaaacttcatctttcgatccttcatttgatatttga 11271636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 27992194 - 27992257
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttga 97  Q
    ||||||||||| ||| |||||| |||||||| ||||||||||| ||| |||| |||||||||||    
T  27992194 ccttgtctaatttcatttgttccaatatcaaacttcatctttcgatctttcgcttgatatttga 27992257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 9762307 - 9762393
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    |||| ||||||||||||| ||   |||| |||||| ||| |||||| ||||||||  |||||||||| ||| |||| ||||||||||    
T  9762307 tagactattctcatgtttcacaatccttatctaatttcatttgttccaatatcaaatttcatctttcgatcattcgcttgatatttg 9762393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 14347963 - 14348017
Alignment:
Q  152 gttttagacttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| ||||||||||||| |||||||  |||||||||||  ||||||||||||||    
T  14347963 gtttaagacttgatttgattaggattatgtcattagacttatccaacaatcccaa 14348017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 20225122 - 20225168
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  20225122 cttggtttgattaggattaagtcattagacttgtccaacaatcccaa 20225168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 3875 - 3789
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    |||| ||||||||||||| ||   ||||||||||| ||| |||||| |||||||| ||||||||||| |||||||  ||||||||||    
T  3875 tagactattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaaacttcatctttcgatccttctcttgatatttg 3789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 4040 - 3954
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    |||| ||||||||||||| ||   ||||||||||| ||| |||||| |||||||| ||||||||||| |||||||  ||||||||||    
T  4040 tagactattctcatgtttcacaatccttgtctaatttcacttgttccaatatcaaacttcatctttcgatccttctcttgatatttg 3954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 22418 - 22505
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatc-aatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||||||||||  ||  ||||||||||| ||| |||||| |||||| || ||||||||||| || ||||| ||||||||||    
T  22418 tagattattctcatgtttcgctatccttgtctaatttcacttgttccaatatcaaaacttcatctttcgattcttcgcttgatatttg 22505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 33260 - 33197
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaat-cttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||| ||| |||||| ||||||||  ||||||||||| |||||||| ||||||||||    
T  33260 ccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatccttcgcttgatatttg 33197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 38567 - 38504
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaat-cttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||| ||| |||||| ||||||||  ||||||||||| |||||||| ||||||||||    
T  38567 ccttgtctaatttcacttgttccaatatcaaaacttcatctttcgatccttcgcttgatatttg 38504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 4488 - 4542
Alignment:
Q  10 tagattattctcatgttttactcaccttgtctaatctcaattgttctaatatcaa 64  Q
    |||| |||||||||||||| |   ||||||||||| |||||||||||||||||||    
T  4488 tagactattctcatgttttgcaatccttgtctaatttcaattgttctaatatcaa 4542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 1848 - 1802
Alignment:
Q  160 cttgatttgaataggatttagtcattagactcgtccaacaatcccaa 206  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  1848 cttggtttgaataggattaggtcattagactcatccaacaatcccaa 1802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 168575 - 168513
Alignment:
Q  34 ccttgtctaatctcaattgttctaatatcaatcttcatctttcaatccttcgattgatatttg 96  Q
    ||||||||||| ||| |||||| |||||||| ||||||||||  |||||| | ||||||||||    
T  168575 ccttgtctaatttcacttgttccaatatcaaacttcatcttttgatcctttgcttgatatttg 168513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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