View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_35 (Length: 215)

Name: NF4645_low_35
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_35
NF4645_low_35
[»] chr7 (5 HSPs)
chr7 (17-196)||(46131332-46131511)
chr7 (89-152)||(46704199-46704262)
chr7 (118-196)||(46125775-46125854)
chr7 (21-60)||(46704160-46704199)
chr7 (109-196)||(46704553-46704645)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 46131332 - 46131511
Alignment:
Q  17 gagaagatgaacttttcttgaatatttttgtggattgggtttatccgaaaagatatccatggactaagactgtttctggaagtttatttatataagactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46131332 gagaagatgaacttttcttgaatatttttgtggattgggtttatccgaaaagatatccatggactaagactgtttctggaagtttatttatataagactg 46131431  T
Q  117 actaaacctcttaaacataaatattggcacaactaatattattaggatcatttctgcaggatgtcattgatgccgatctt 196  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46131432 gctaaacctcttaaacataaatattggcacaactaatattattaggatcatttctgcaggatgtcattgatgccgatctt 46131511  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 46704199 - 46704262
Alignment:
Q  89 tttctggaagtttatttatataagactgactaaacctcttaaacataaatattggcacaactaa 152  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46704199 tttcttgaagtttatttatataagactggctaaacctcttaaacataaatattggcacaactaa 46704262  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 46125775 - 46125854
Alignment:
Q  118 ctaaacctcttaaacata-aatattggcacaactaatattattaggatcatttctgcaggatgtcattgatgccgatctt 196  Q
    |||||||| ||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  46125775 ctaaaccttttaaacatagaatattgtcataactaatattattatgatcttttctgcaggatgtcattgacgccgatctt 46125854  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 46704160 - 46704199
Alignment:
Q  21 agatgaacttttcttgaatatttttgtggattgggtttat 60  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46704160 agatgaacttttcttgaatatttttgtggattgggtttat 46704199  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 46704553 - 46704645
Alignment:
Q  109 taagactgactaaacctcttaaacata-aatattggcacaact----aatattattaggatcatttctgcaggatgtcattgatgccgatctt 196  Q
    |||||||| |||||||| ||||||||| ||||||| |||||||    |||||||||| |||| |||  |||||||||||||||||| ||||||    
T  46704553 taagactggctaaaccttttaaacatagaatattgtcacaactaactaatattattatgatcttttgcgcaggatgtcattgatgctgatctt 46704645  T

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