View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_38 (Length: 210)
Name: NF4645_low_38
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 46131336 - 46131511
Alignment:
| Q |
16 |
agatgaacttttcttgaatatttttgtggattgggtttatccgaaaagatatccatggactaagactgtttctggaagtttatttatataagactgacta |
115 |
Q |
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| T |
46131336 |
agatgaacttttcttgaatatttttgtggattgggtttatccgaaaagatatccatggactaagactgtttctggaagtttatttatataagactggcta |
46131435 |
T |
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| Q |
116 |
aacctcttaaacataaatattggcacaactaatattattaggatcatttctgcaggatgtcattgatgccgatctt |
191 |
Q |
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| T |
46131436 |
aacctcttaaacataaatattggcacaactaatattattaggatcatttctgcaggatgtcattgatgccgatctt |
46131511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 46704199 - 46704262
Alignment:
| Q |
84 |
tttctggaagtttatttatataagactgactaaacctcttaaacataaatattggcacaactaa |
147 |
Q |
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| T |
46704199 |
tttcttgaagtttatttatataagactggctaaacctcttaaacataaatattggcacaactaa |
46704262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 46125775 - 46125854
Alignment:
| Q |
113 |
ctaaacctcttaaacata-aatattggcacaactaatattattaggatcatttctgcaggatgtcattgatgccgatctt |
191 |
Q |
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| T |
46125775 |
ctaaaccttttaaacatagaatattgtcataactaatattattatgatcttttctgcaggatgtcattgacgccgatctt |
46125854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 46704159 - 46704199
Alignment:
| Q |
15 |
gagatgaacttttcttgaatatttttgtggattgggtttat |
55 |
Q |
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| T |
46704159 |
gagatgaacttttcttgaatatttttgtggattgggtttat |
46704199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 46704553 - 46704645
Alignment:
| Q |
104 |
taagactgactaaacctcttaaacata-aatattggcacaact----aatattattaggatcatttctgcaggatgtcattgatgccgatctt |
191 |
Q |
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| T |
46704553 |
taagactggctaaaccttttaaacatagaatattgtcacaactaactaatattattatgatcttttgcgcaggatgtcattgatgctgatctt |
46704645 |
T |
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