View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_5 (Length: 455)
Name: NF4645_low_5
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 330 - 443
Target Start/End: Original strand, 31111368 - 31111481
Alignment:
| Q |
330 |
ccaagattacatattttcatcaacttccctcaaaacattcatcttcaacccaaaatttgaagaaataatatgtaaatctagaacccacaaaaaaccctcg |
429 |
Q |
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| T |
31111368 |
ccaagattacatattttcatcaacttccctcaaaacattcatcttcaaccaaaaatttgaagaaataatatgtagatctagaacccacaaaaaaccctcg |
31111467 |
T |
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| Q |
430 |
atgcattcatctca |
443 |
Q |
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| T |
31111468 |
atgcattcatctca |
31111481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 31111170 - 31111305
Alignment:
| Q |
132 |
acttgggtcctttatcttcttattttttaaataaatattttcattgnnnnnnn-tacaacctagaaaaaataaataattttcttcaaattcatcttcata |
230 |
Q |
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| T |
31111170 |
acttgggtcctttatcttcttattttttaaataaatattttcattgaaaaaaaatacaacctagaaaaaataaataattttcttcaaattcatcttcata |
31111269 |
T |
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| Q |
231 |
gttaatcttcctcatcctctttttcttcaaacctat |
266 |
Q |
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| T |
31111270 |
gtcaatcttcctcatcctctttttcttcaaacctat |
31111305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 31057186 - 31057276
Alignment:
| Q |
129 |
ctcacttgggtcctttatcttcttattttttaaataaatattttcattgnnnnnnntacaacctagaaaaaataaataattttcttcaaat |
219 |
Q |
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| T |
31057186 |
ctcacttggatcctttatcttcttatcctttaaataaatattttcattgaaacagatcaaacctagaaaaaataaattattttcttcaaat |
31057276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 31057393 - 31057492
Alignment:
| Q |
330 |
ccaagattacatattttcatcaacttccctcaaaacattcatcttcaacccaaaatttgaagaaataatatgtaaatctagaacccacaaaaaaccctcg |
429 |
Q |
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| T |
31057393 |
ccaacattacatatcttcatcaactttcctcttaacattcattttcaacctataaattgaagaaagaatacatagatctagaacccataaaaaacactcg |
31057492 |
T |
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