View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4645_low_6 (Length: 392)

Name: NF4645_low_6
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4645_low_6
NF4645_low_6
[»] chr7 (18 HSPs)
chr7 (16-375)||(29445303-29445662)
chr7 (16-368)||(29475987-29476339)
chr7 (16-240)||(29459707-29459930)
chr7 (16-105)||(29453804-29453893)
chr7 (16-116)||(29921670-29921770)
chr7 (16-104)||(29430669-29430757)
chr7 (53-111)||(29107121-29107179)
chr7 (49-107)||(29872027-29872085)
chr7 (67-107)||(29881570-29881610)
chr7 (187-229)||(19344414-19344456)
chr7 (41-107)||(19350801-19350867)
chr7 (47-118)||(19887419-19887490)
chr7 (187-229)||(19374944-19374986)
chr7 (47-119)||(1985678-1985750)
chr7 (193-229)||(6864664-6864700)
chr7 (50-118)||(19645433-19645501)
chr7 (66-118)||(19779893-19779945)
chr7 (183-227)||(29453950-29453994)
[»] scaffold0242 (2 HSPs)
scaffold0242 (29-263)||(13397-13624)
scaffold0242 (29-263)||(22232-22459)
[»] chr1 (8 HSPs)
chr1 (79-283)||(4366226-4366427)
chr1 (30-107)||(4014644-4014721)
chr1 (27-107)||(4571214-4571294)
chr1 (24-106)||(17563860-17563942)
chr1 (186-280)||(4016631-4016725)
chr1 (16-107)||(10219305-10219396)
chr1 (49-107)||(4016497-4016555)
chr1 (66-107)||(21855098-21855139)
[»] chr4 (5 HSPs)
chr4 (47-111)||(53429811-53429875)
chr4 (41-120)||(3560660-3560739)
chr4 (53-120)||(1685981-1686048)
chr4 (27-84)||(3558067-3558124)
chr4 (208-283)||(53429971-53430046)
[»] chr8 (1 HSPs)
chr8 (47-117)||(27618720-27618790)
[»] chr2 (2 HSPs)
chr2 (66-107)||(20699218-20699259)
chr2 (47-104)||(20712270-20712325)
[»] scaffold0097 (1 HSPs)
scaffold0097 (47-104)||(16109-16164)
[»] chr5 (2 HSPs)
chr5 (66-107)||(24330614-24330655)
chr5 (197-229)||(18964673-18964705)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 29445303 - 29445662
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaacct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29445303 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaacaggaacttactttcaaaaaattgaaactaagctttcaacgtaaacct 29445402  T
Q  116 tggccgagtaccacagtatagaattacttgttcccttatcattgataatagtactacttgtagtcaattttgttcgctctgctctattttctctccaatt 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29445403 tggccgagtaccacagtatagaattacttgttccattatcattgataatagtactacttgtagtcaattttgttcgctctgctctattttctctccaatt 29445502  T
Q  216 atagagaattgcttctgatccttgactgctcctaagtaccagtgtatcgtcatcctcataaagaagcatcggtatcaattcaaattgatatttgatctcg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29445503 atagagaattgcttctgatccttgactgctcctaagtaccagtgtatcgtcatcctcataaagaagcatcggtaccaattcaaattgatatttgatctcg 29445602  T
Q  316 tcatcactagagtcttcatcactgaagtagtcataatttcttggaagattttgtagattg 375  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29445603 tcatcactagagtcttcatcactaaagtagtcataatttcttggaagattttgtagattg 29445662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 29475987 - 29476339
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaacct 115  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  29475987 atgaaaacaaaatataaaaatgaacataaattcaaacaagtaaactataaaagagaaacttactttcaaaaaattgaaactaagctttcaaagtaaacct 29476086  T
Q  116 tggccgagtaccacagtatagaattacttgttcccttatcattgataatagtactacttgtagtcaattttgttcgctctgctctattttctctccaatt 215  Q
    ||| |||| |||| | | ||||||| ||  |||| ||||||||||||||||||||||||||||| |  |||||| ||||| |||||||||||||||||||    
T  29476087 tggtcgagcaccaaaatgtagaattgctacttccattatcattgataatagtactacttgtagtaacctttgtttgctctactctattttctctccaatt 29476186  T
Q  216 atagagaattgcttctgatccttgactgctcctaagtaccagtgtatcgtcatcctcataaagaagcatcggtatcaattcaaattgatatttgatctcg 315  Q
    |||||||||||  |  ||| |||| ||| || ||| ||||||||||||  |||||||| ||||||||| ||| | ||||| ||| ||||| || ||||      
T  29476187 atagagaattggatgggattcttggctgttcttaaataccagtgtatcagcatcctcagaaagaagcagcggcaccaattgaaaatgatactttatcttt 29476286  T
Q  316 tcatcactagagtcttcatcactgaagtagtcataatttcttggaagattttg 368  Q
    |||| | || | ||||| ||||  ||||||||||  ||| || ||||||||||    
T  29476287 tcatgattaaactcttcgtcaccaaagtagtcatggtttatttgaagattttg 29476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 29459707 - 29459930
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaa-----ccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgta 110  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||     |||||||||||||||||||||| |||||||||||| |||||||||||| ||    
T  29459707 atgaaaacaacatatacaaatgaacataaattcaaacaagtaaattaaaccataaaagaggaacttactttaaaaaaattgaaattaagctttcaacata 29459806  T
Q  111 aaccttggccgagtaccacagtatagaattacttgttcccttatcattgataatagtactacttgtagtcaattttgttcgctctgctctattttctctc 210  Q
    |||||||| |||| ||||  |||||||||| || |||    ||| || | |||   |||| |||||||| | |||||||| |||| ||||||||||||||    
T  29459807 aaccttggtcgagcaccagcgtatagaattgctagtt---atattatcggtaa---tactgcttgtagtaatttttgttcactcttctctattttctctc 29459900  T
Q  211 caattatagagaattgcttctgatccttga 240  Q
     |||| |||| ||||| | ||||| |||||    
T  29459901 taattttagaaaattgttgctgattcttga 29459930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 29453804 - 29453893
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttca 105  Q
    |||||||||| |||||||||||||   ||| |||||||| ||||||| | | |||||||||||||||| |||||||||||||||||||||    
T  29453804 atgaaaacaacatatacaaatgaatgaaaattcaaacaactaaaccacagaggaggaacttactttcataaaattgaaactaagctttca 29453893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 29921670 - 29921770
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaacct 115  Q
    ||||||||||  |||||||| ||| |||||  |||||||||||| || | || ||||||||||||||||||||||| ||||||||||||||| ||| |||    
T  29921670 atgaaaacaacttatacaaacgaacataaatccaaacaagtaaatcacataataggaacttactttcaaaaaattggaactaagctttcaacataatcct 29921769  T
Q  116 t 116  Q
    |    
T  29921770 t 29921770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 29430669 - 29430757
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttc 104  Q
    ||||||||||  ||||||||||||   ||| |||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||    
T  29430669 atgaaaacaacgtatacaaatgaatgaaaattcaaacaagtaaaccacagaggaggaacttactttcataaaactgaaactaagctttc 29430757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 29107179 - 29107121
Alignment:
Q  53 aagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaa 111  Q
    |||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||    
T  29107179 aagtaaaccatagaaaagcaacttactttcaaaatattgaaactaagctttcaacgtaa 29107121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 29872085 - 29872027
Alignment:
Q  49 aaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||    
T  29872085 aaacaagtaaaccatgggagaggaacttactttcaaaaaattgaaactaaactttcaac 29872027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 29881610 - 29881570
Alignment:
Q  67 agaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29881610 agaggaacttactttcaaaaaattgaaactaagctttcaac 29881570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 19344414 - 19344456
Alignment:
Q  187 gttcgctctgctctattttctctccaattatagagaattgctt 229  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  19344414 gttcgctctgctctattgtctctcaaattatagagaattgctt 19344456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19350801 - 19350867
Alignment:
Q  41 ataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    ||||| |||||||| |||| ||| |||||| ||||||||||||| |  |||||||||||||||||||    
T  19350801 ataaattcaaacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaac 19350867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 19887419 - 19887490
Alignment:
Q  47 tcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttgg 118  Q
    |||||||| |||| |||  || || |||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  19887419 tcaaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatccttgg 19887490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 19374986 - 19374944
Alignment:
Q  187 gttcgctctgctctattttctctccaattatagagaattgctt 229  Q
    |||||||||||||| || |||||| ||||||||||||||||||    
T  19374986 gttcgctctgctctgttgtctctcaaattatagagaattgctt 19374944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 1985678 - 1985750
Alignment:
Q  47 tcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttggc 119  Q
    ||||||||||||| |||  ||||| ||||||| ||||| |||| || || ||||||||||||||  |||||||    
T  1985678 tcaaacaagtaaatcatcgaagagaaacttaccttcaagaaatcgataccaagctttcaacgtatcccttggc 1985750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 6864664 - 6864700
Alignment:
Q  193 tctgctctattttctctccaattatagagaattgctt 229  Q
    ||||||||| | |||||||||||||||||||||||||    
T  6864664 tctgctctactatctctccaattatagagaattgctt 6864700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 19645433 - 19645501
Alignment:
Q  50 aacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttgg 118  Q
    |||||||||| ||||| | || ||||||||||||| || ||||||| || |||||||| ||| ||||||    
T  19645433 aacaagtaaatcataataaagaaacttactttcaacaagttgaaaccaaactttcaacataatccttgg 19645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 19779945 - 19779893
Alignment:
Q  66 aagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttgg 118  Q
    ||||| |||||||| ||||||  ||||||||||||||||||| ||| ||||||    
T  19779945 aagagaaacttactctcaaaaggttgaaactaagctttcaacataatccttgg 19779893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 29453950 - 29453994
Alignment:
Q  183 ttttgttcgctctgctctattttctctccaattatagagaattgc 227  Q
    ||||||||||||| || |||| |||||||| ||||||||||||||    
T  29453950 ttttgttcgctctactttattatctctccagttatagagaattgc 29453994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 13397 - 13624
Alignment:
Q  29 atacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttggccgagtacca 128  Q
    |||| |||||| ||| | |||||||||||||||||||||||| ||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  13397 ataccaatgaacatagattcaaacaagtaaaccataaaagag-aacatactctcaaaaaattggaaccaagctttcaacgtaaaccttggccgagcacca 13495  T
Q  129 cagtatagaattacttgttcccttatcattgataatagtactacttgtagtcaattttgttcgctctgctctattttctctccaattatagagaattgct 228  Q
    |||||||||||| ||        |||||| | ||| |||| ||||||| || | |||||||||||   ||||||||||| ||||||||||||||||||      
T  13496 cagtatagaattcct------actatcatcggtaacagtagtacttgttgtaacttttgttcgctgcactctattttctttccaattatagagaattgga 13589  T
Q  229 tctgatccttgactgctcctaagtaccagtgtatc 263  Q
    |  ||| |||| ||| || |||| |||||||||||    
T  13590 tgggattcttggctggtcttaagcaccagtgtatc 13624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 22232 - 22459
Alignment:
Q  29 atacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttggccgagtacca 128  Q
    |||| |||||| ||| | |||||||||||||||||||||||| ||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  22232 ataccaatgaacatagattcaaacaagtaaaccataaaagag-aacatactctcaaaaaattggaaccaagctttcaacgtaaaccttggccgagcacca 22330  T
Q  129 cagtatagaattacttgttcccttatcattgataatagtactacttgtagtcaattttgttcgctctgctctattttctctccaattatagagaattgct 228  Q
    |||||||||||| ||        |||||| | ||| |||| ||||||| || | |||||||||||   ||||||||||| ||||||||||||||||||      
T  22331 cagtatagaattcct------actatcatcggtaacagtagtacttgttgtaacttttgttcgctgcactctattttctttccaattatagagaattgga 22424  T
Q  229 tctgatccttgactgctcctaagtaccagtgtatc 263  Q
    |  ||| |||| ||| || |||| |||||||||||    
T  22425 tgggattcttggctggtcttaagcaccagtgtatc 22459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 4366226 - 4366427
Alignment:
Q  79 tttcaaaaaattgaaactaagctttcaacgtaaaccttggccgagtaccacagtatagaattacttgttcccttatcattgataatagtactacttgtag 178  Q
    ||||||||| |||||||||| |||||||||||||||||||  ||   |||| ||||| |||| || ||||  |||||   | ||||||||||  ||| ||    
T  4366226 tttcaaaaagttgaaactaaactttcaacgtaaaccttggttgaaacccactgtatataatttctggttctattatc---ggtaatagtactttttgcag 4366322  T
Q  179 tcaattttgttcgctctgctctattttctctccaattatagagaattgcttctgatccttgactgctcctaagtaccagtgtatcgtcatcctcataaag 278  Q
    ||| ||||||||||||| |||| || |||||| ||||||||||||||||||   |  ||||||||||| |||||| |||||| || ||||| ||| ||||    
T  4366323 tcatttttgttcgctctactcttttatctctcaaattatagagaattgcttggtaatcttgactgctcttaagtaacagtgtgtcatcatcatcagaaag 4366422  T
Q  279 aagca 283  Q
    |||||    
T  4366423 aagca 4366427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 4014644 - 4014721
Alignment:
Q  30 tacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    |||||||||| ||||| ||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||||    
T  4014644 tacaaatgaaaataaattcaaacacgtaaacaatgaaagagaaacttactttcaaaaaattggaactaagctttcaac 4014721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 4571294 - 4571214
Alignment:
Q  27 atatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    |||||||||||||  |||| ||||||  |||||| ||  ||||| |||||||||||||||||||| |||||||||||||||    
T  4571294 atatacaaatgaacgtaaattcaaacccgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaac 4571214  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 17563860 - 17563942
Alignment:
Q  24 aaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaa 106  Q
    |||| |||||||| || ||| | | ||||||||||||| |  |||||||||||||||||||||||| | ||||||||||||||    
T  17563860 aaaaaatacaaataaacatagattaaaacaagtaaaccgtggaagaggaacttactttcaaaaaataggaactaagctttcaa 17563942  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 4016631 - 4016725
Alignment:
Q  186 tgttcgctctgctctattttctctccaattatagagaattgcttctgatccttgactgctcctaagtaccagtgtatcgtcatcctcataaagaa 280  Q
    |||||||| ||||||||| ||||||| |||||||||||||| ||  ||| || ||||||||  ||||| ||||| |||  |||||||| ||||||    
T  4016631 tgttcgctttgctctattatctctcctattatagagaattgtttgggattctagactgctctgaagtatcagtgaatcaccatcctcagaaagaa 4016725  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 10219396 - 10219305
Alignment:
Q  16 atgaaaacaaaatatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    |||||||||| |||||||||||||  |||| ||||||||||||| |||  ||   ||||||||||| ||  |||||  ||||||||||||||    
T  10219396 atgaaaacaacatatacaaatgaacctaaattcaaacaagtaaagcatggaatctgaacttacttttaaggaattgggactaagctttcaac 10219305  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 4016497 - 4016555
Alignment:
Q  49 aaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    ||||| |||||| ||  ||||| |||||||||||||||||||| |||||| ||||||||    
T  4016497 aaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaaactttcaac 4016555  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 21855098 - 21855139
Alignment:
Q  66 aagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    ||||| |||||||||||||||| ||| |||||||||||||||    
T  21855098 aagagaaacttactttcaaaaacttggaactaagctttcaac 21855139  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 53429811 - 53429875
Alignment:
Q  47 tcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaa 111  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  53429811 tcaaacaagtaaaccatgaaagaggaacttaatttcaaaaaattgaaactaagctctcaatgtaa 53429875  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 3560660 - 3560739
Alignment:
Q  41 ataaactcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttggcc 120  Q
    ||||| ||||||||||||||||   ||||||||||||||||||| | ||||||| |||||||||||| ||| || |||||    
T  3560660 ataaattcaaacaagtaaaccaacgaagaggaacttactttcaacagattgaaattaagctttcaacataacccgtggcc 3560739  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 1685981 - 1686048
Alignment:
Q  53 aagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttggcc 120  Q
    |||||||| |||||||||  |||||||||||| |||| |||| |||||||||||| ||| ||||||||    
T  1685981 aagtaaacaataaaagagtgacttactttcaacaaatcgaaattaagctttcaacataacccttggcc 1686048  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 3558124 - 3558067
Alignment:
Q  27 atatacaaatgaagataaactcaaacaagtaaaccataaaagaggaacttactttcaa 84  Q
    ||||||||||  | ||||| |||||||||||||| ||| |||||||||||||||||||    
T  3558124 atatacaaatttacataaattcaaacaagtaaacgatagaagaggaacttactttcaa 3558067  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 53429971 - 53430046
Alignment:
Q  208 ctccaattatagagaattgcttctgatccttgactgctcctaagtaccagtgtatcgtcatcctcataaagaagca 283  Q
    |||||||||||||||||||||||   | ||||||  || ||||||| |||||||||  |||||||| |||||||||    
T  53429971 ctccaattatagagaattgcttcgttttcttgacgacttctaagtagcagtgtatcagcatcctcaaaaagaagca 53430046  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 27618790 - 27618720
Alignment:
Q  47 tcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttcaacgtaaaccttg 117  Q
    ||||||||||||  | | ||| |||||||||||||||| |||||||||| ||||||||||| ||| |||||    
T  27618790 tcaaacaagtaattcgtcaaataggaacttactttcaagaaattgaaaccaagctttcaacataatccttg 27618720  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 20699218 - 20699259
Alignment:
Q  66 aagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  20699218 aagaggaacttactttcaaaaagttgaaactaaactttcaac 20699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 20712270 - 20712325
Alignment:
Q  47 tcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttc 104  Q
    ||||||||||||| |||||  ||||||||||||||||| || ||||||| ||||||||    
T  20712270 tcaaacaagtaaatcataa--gaggaacttactttcaacaagttgaaaccaagctttc 20712325  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 16109 - 16164
Alignment:
Q  47 tcaaacaagtaaaccataaaagaggaacttactttcaaaaaattgaaactaagctttc 104  Q
    ||||||||||||| |||||  ||||||||||||||||| || ||||||| ||||||||    
T  16109 tcaaacaagtaaatcataa--gaggaacttactttcaacaagttgaaaccaagctttc 16164  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 24330614 - 24330655
Alignment:
Q  66 aagaggaacttactttcaaaaaattgaaactaagctttcaac 107  Q
    ||||| |||||||||||||||| ||| |||||||||||||||    
T  24330614 aagagaaacttactttcaaaaacttggaactaagctttcaac 24330655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 18964673 - 18964705
Alignment:
Q  197 ctctattttctctccaattatagagaattgctt 229  Q
    ||||||| |||||||||||||||||||||||||    
T  18964673 ctctattatctctccaattatagagaattgctt 18964705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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