View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_8 (Length: 372)
Name: NF4645_low_8
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 38836292 - 38836566
Alignment:
| Q |
18 |
aaaacaataatgcaactggattgaatttttattatatatcctaaagtcatggcaaaaacatttctccctttatttcggccatttatctagggcattgttt |
117 |
Q |
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| T |
38836292 |
aaaacaataatgcaactggattgaatttttattatat--cctaa-gtcatggcaaaaacatttccccctttatttcggccatttatctagggcattgttt |
38836388 |
T |
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| Q |
118 |
atgataatcctcaacatttcctttttaagttatgatcctatgatatttttgacttttgtaatggctacat--tatatcagtatgttactcttgcttgcat |
215 |
Q |
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| T |
38836389 |
atgataatcctcaaaatttcctttttaagttatgatcctatgatatttttgacttttgtaatggctacatggtatatcagtatgttact----cttgcat |
38836484 |
T |
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| Q |
216 |
atcaactttggaattgagacatccttgtttgtgtatcaaatgcgtgttagaagactcaaattatataaaataaaataaaata |
297 |
Q |
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| T |
38836485 |
atcaactttggaattgagatatccttgtttgtgtatcaaatgcgtgttagaagactcaaattatataaaataaaataaaata |
38836566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 38836564 - 38836606
Alignment:
| Q |
280 |
ataaaataaaataaaatagaggttgaacatggacgaacctata |
322 |
Q |
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| T |
38836564 |
ataaaataaaataaaatagaggttgaatatggacgaacctata |
38836606 |
T |
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