View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4645_low_9 (Length: 356)
Name: NF4645_low_9
Description: NF4645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4645_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 51417842 - 51418166
Alignment:
| Q |
20 |
taattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaaattaattaattaaaaggagttccaataacattgaaagaatggaa |
119 |
Q |
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| T |
51417842 |
taattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaaattaattaattaaaaggagttccaataacatagaaagaatggaa |
51417941 |
T |
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| Q |
120 |
aaagaaggacgatcacaataaaactgtcatgattatacttcactactatagctacctatcaatattcttcaatatccaaaacagcaacatcaaatcaaac |
219 |
Q |
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| T |
51417942 |
aaagaaggacgatcacaataaaagtgtcatgattatacttcactactatagctacctaacaatattcttcaatatccaaaacagcaacatcaaatcaaac |
51418041 |
T |
|
| Q |
220 |
caacattctctctctttctttgcccttgtcctaactttttctttcctttaaattcataggagtataactcacaagtcttccctcacaaaactaacacaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51418042 |
caacattctctctctttctttgcccttgtcctaactttttctttcctttaaattcataggag--taactcacaagtcttccctcacaaaactaacacaga |
51418139 |
T |
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| Q |
320 |
tcttaaccaataatcccattgcctttg |
346 |
Q |
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| T |
51418140 |
tcttaaccaataatcccattgcctttg |
51418166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 51412871 - 51412949
Alignment:
| Q |
87 |
aaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaactgtcatgattatacttcactac |
165 |
Q |
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| T |
51412871 |
aaaagaagttccaataacaaggaaagtaaggaaaaagaaagacaagcacaatgaaactgtcatgattatagttcactac |
51412949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 29323501 - 29323615
Alignment:
| Q |
20 |
taattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaaattaattaattaaaaggagttccaataacattgaaagaatggaa |
119 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |
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| T |
29323501 |
taattaaattgtc--aactaacgaaaattaacaaa------gcatgccaaagaaaaataaattaattaaaaggagttccaataacatagaaagaaaggaa |
29323592 |
T |
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| Q |
120 |
aaagaaggacgatcacaataaaa |
142 |
Q |
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|||||||||| ||||||||||| |
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| T |
29323593 |
aaagaaggacagtcacaataaaa |
29323615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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