View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4646-Insertion-1 (Length: 994)

Name: NF4646-Insertion-1
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4646-Insertion-1
NF4646-Insertion-1
[»] chr1 (19 HSPs)
chr1 (8-816)||(44999315-45000126)
chr1 (564-674)||(15232752-15232862)
chr1 (559-676)||(15234045-15234162)
chr1 (564-675)||(49801617-49801728)
chr1 (581-676)||(27814309-27814404)
chr1 (564-673)||(16963834-16963943)
chr1 (568-676)||(49802899-49803007)
chr1 (578-690)||(46111479-46111590)
chr1 (709-811)||(48527690-48527790)
chr1 (579-674)||(52628879-52628974)
chr1 (586-692)||(16123309-16123415)
chr1 (577-675)||(24499660-24499758)
chr1 (590-695)||(15072775-15072880)
chr1 (578-675)||(50444703-50444800)
chr1 (577-675)||(15071355-15071453)
chr1 (578-822)||(35943295-35943549)
chr1 (722-809)||(7306116-7306202)
chr1 (709-744)||(9482611-9482646)
chr1 (580-694)||(50442640-50442754)
[»] chr2 (28 HSPs)
chr2 (564-697)||(12359662-12359795)
chr2 (564-677)||(6030605-6030718)
chr2 (564-829)||(18616846-18617122)
chr2 (564-694)||(29219385-29219514)
chr2 (564-694)||(29332684-29332813)
chr2 (564-674)||(34468958-34469068)
chr2 (564-694)||(44191136-44191266)
chr2 (564-676)||(29220880-29220992)
chr2 (564-676)||(29334179-29334291)
chr2 (564-674)||(1085394-1085502)
chr2 (581-675)||(43033099-43033193)
chr2 (564-693)||(1082988-1083116)
chr2 (559-675)||(249019-249135)
chr2 (559-693)||(6032301-6032435)
chr2 (577-675)||(11547672-11547770)
chr2 (578-675)||(28562814-28562911)
chr2 (698-829)||(29219532-29219660)
chr2 (698-829)||(29332831-29332959)
chr2 (564-673)||(44192453-44192562)
chr2 (564-676)||(18615516-18615628)
chr2 (756-823)||(7436668-7436735)
chr2 (564-630)||(2276281-2276347)
chr2 (564-630)||(34147136-34147202)
chr2 (564-630)||(34148410-34148476)
chr2 (580-673)||(17459269-17459362)
chr2 (575-628)||(26134827-26134880)
chr2 (559-628)||(35903503-35903572)
chr2 (578-695)||(43034457-43034573)
[»] chr5 (20 HSPs)
chr5 (564-829)||(22308640-22308915)
chr5 (698-829)||(30859011-30859141)
chr5 (564-829)||(30910741-30911017)
chr5 (559-677)||(22307503-22307621)
chr5 (564-694)||(33173946-33174076)
chr5 (578-829)||(22047746-22048010)
chr5 (580-694)||(22049123-22049236)
chr5 (564-693)||(30912150-30912278)
chr5 (700-814)||(1102765-1102877)
chr5 (734-829)||(36898819-36898916)
chr5 (578-693)||(325173-325287)
chr5 (564-630)||(9169586-9169652)
chr5 (698-770)||(11262538-11262610)
chr5 (564-630)||(8521255-8521321)
chr5 (562-674)||(39603851-39603963)
chr5 (564-630)||(1010414-1010480)
chr5 (564-630)||(8523796-8523862)
chr5 (564-630)||(32759098-32759164)
chr5 (573-630)||(32757834-32757891)
chr5 (590-675)||(39605474-39605559)
[»] chr4 (37 HSPs)
chr4 (566-694)||(50546908-50547036)
chr4 (566-677)||(53204363-53204474)
chr4 (564-694)||(10168769-10168899)
chr4 (564-694)||(33231389-33231519)
chr4 (709-829)||(44498617-44498736)
chr4 (698-829)||(2312323-2312451)
chr4 (558-693)||(23203941-23204075)
chr4 (565-675)||(7707589-7707699)
chr4 (700-829)||(7707737-7707864)
chr4 (559-693)||(13165491-13165624)
chr4 (564-677)||(10167425-10167538)
chr4 (564-693)||(54485532-54485661)
chr4 (564-693)||(7708776-7708906)
chr4 (564-676)||(23201846-23201958)
chr4 (564-673)||(1588096-1588205)
chr4 (709-813)||(56085503-56085605)
chr4 (578-674)||(37882848-37882944)
chr4 (577-676)||(1190196-1190295)
chr4 (577-675)||(390230-390328)
chr4 (564-674)||(2312488-2312598)
chr4 (564-638)||(4714019-4714093)
chr4 (709-814)||(36845566-36845669)
chr4 (579-676)||(1587197-1587294)
chr4 (564-673)||(6348155-6348264)
chr4 (577-674)||(44501531-44501628)
chr4 (587-692)||(53205471-53205576)
chr4 (580-676)||(1188859-1188955)
chr4 (722-814)||(38555134-38555226)
chr4 (576-628)||(54865117-54865169)
chr4 (585-673)||(55764342-55764430)
chr4 (578-677)||(1831266-1831365)
chr4 (614-693)||(54484363-54484442)
chr4 (559-674)||(54866637-54866751)
chr4 (698-792)||(1794558-1794651)
chr4 (567-673)||(52241162-52241268)
chr4 (578-675)||(1794425-1794522)
chr4 (565-675)||(50548228-50548334)
[»] chr7 (37 HSPs)
chr7 (559-829)||(32254984-32255264)
chr7 (559-693)||(3413527-3413661)
chr7 (564-676)||(13564243-13564355)
chr7 (564-674)||(22538854-22538964)
chr7 (559-675)||(40738843-40738960)
chr7 (564-676)||(22335979-22336091)
chr7 (564-675)||(3414839-3414950)
chr7 (709-819)||(44372885-44372994)
chr7 (709-819)||(44381741-44381850)
chr7 (564-693)||(40812601-40812729)
chr7 (558-693)||(11501174-11501308)
chr7 (578-674)||(47456381-47456477)
chr7 (722-829)||(22537729-22537832)
chr7 (578-675)||(33096883-33096980)
chr7 (564-695)||(22537559-22537688)
chr7 (722-814)||(48312209-48312300)
chr7 (580-674)||(43459471-43459565)
chr7 (578-675)||(6173455-6173552)
chr7 (564-693)||(13562822-13562950)
chr7 (698-763)||(35295844-35295909)
chr7 (578-675)||(45454052-45454149)
chr7 (578-675)||(47059122-47059219)
chr7 (564-676)||(11502426-11502538)
chr7 (580-676)||(30310137-30310233)
chr7 (578-674)||(45455378-45455474)
chr7 (565-628)||(24281075-24281138)
chr7 (578-673)||(32256402-32256497)
chr7 (709-764)||(43460727-43460782)
chr7 (588-674)||(4300054-4300140)
chr7 (700-829)||(11502263-11502389)
chr7 (564-674)||(32602933-32603043)
chr7 (578-692)||(40508392-40508506)
chr7 (722-813)||(16756040-16756128)
chr7 (577-674)||(30333298-30333395)
chr7 (564-629)||(30334688-30334753)
chr7 (784-829)||(46835906-46835951)
chr7 (763-812)||(47060334-47060383)
[»] chr8 (27 HSPs)
chr8 (564-676)||(13117637-13117749)
chr8 (564-693)||(42100094-42100222)
chr8 (701-829)||(32695116-32695241)
chr8 (564-693)||(13116330-13116458)
chr8 (700-829)||(17455194-17455321)
chr8 (564-677)||(211595-211708)
chr8 (564-677)||(240548-240661)
chr8 (564-677)||(725218-725331)
chr8 (564-677)||(793903-794016)
chr8 (564-693)||(28418806-28418935)
chr8 (564-693)||(28420161-28420290)
chr8 (564-675)||(42098563-42098674)
chr8 (709-819)||(20180525-20180634)
chr8 (564-674)||(17338041-17338151)
chr8 (564-675)||(17339554-17339665)
chr8 (698-829)||(24192504-24192634)
chr8 (713-813)||(6397942-6398041)
chr8 (559-629)||(32797133-32797203)
chr8 (569-630)||(45394972-45395033)
chr8 (586-674)||(6397805-6397893)
chr8 (578-677)||(8570132-8570231)
chr8 (709-764)||(32798436-32798491)
chr8 (698-813)||(42870960-42871074)
chr8 (600-674)||(6398503-6398577)
chr8 (564-630)||(41743665-41743731)
chr8 (578-675)||(26696546-26696643)
chr8 (578-675)||(42872194-42872291)
[»] chr6 (24 HSPs)
chr6 (564-829)||(18346592-18346866)
chr6 (564-676)||(23397358-23397470)
chr6 (564-693)||(232176-232303)
chr6 (564-813)||(23392214-23392475)
chr6 (564-693)||(5186568-5186696)
chr6 (564-676)||(17839143-17839255)
chr6 (564-675)||(2687929-2688040)
chr6 (564-675)||(6702876-6702986)
chr6 (565-638)||(29722664-29722737)
chr6 (559-675)||(17837611-17837727)
chr6 (564-676)||(29380191-29380303)
chr6 (709-828)||(29381572-29381689)
chr6 (564-675)||(6452516-6452627)
chr6 (564-638)||(5187664-5187738)
chr6 (709-828)||(17837773-17837890)
chr6 (559-674)||(6701375-6701490)
chr6 (156-266)||(18245652-18245762)
chr6 (576-677)||(2687242-2687343)
chr6 (579-675)||(6452299-6452395)
chr6 (564-638)||(12256626-12256700)
chr6 (564-693)||(233556-233680)
chr6 (564-675)||(29381735-29381846)
chr6 (579-629)||(7310291-7310341)
chr6 (564-694)||(32507012-32507142)
[»] chr3 (35 HSPs)
chr3 (698-829)||(35371053-35371183)
chr3 (564-693)||(50810821-50810950)
chr3 (564-693)||(50864914-50865043)
chr3 (586-793)||(42684898-42685115)
chr3 (564-675)||(53614278-53614389)
chr3 (559-693)||(53612866-53612999)
chr3 (564-673)||(10732136-10732245)
chr3 (709-829)||(26886429-26886547)
chr3 (564-673)||(26887562-26887671)
chr3 (564-693)||(50809421-50809550)
chr3 (564-693)||(50866312-50866441)
chr3 (565-675)||(27837921-27838031)
chr3 (564-674)||(41264659-41264769)
chr3 (564-693)||(10730885-10731013)
chr3 (709-829)||(41264494-41264612)
chr3 (588-693)||(53194857-53194962)
chr3 (580-695)||(18458642-18458757)
chr3 (590-689)||(35372150-35372248)
chr3 (558-628)||(3817315-3817385)
chr3 (564-674)||(42686151-42686261)
chr3 (600-675)||(3208520-3208595)
chr3 (580-675)||(18197163-18197258)
chr3 (564-675)||(26886272-26886383)
chr3 (590-677)||(53421764-53421851)
chr3 (564-638)||(35370913-35370987)
chr3 (564-674)||(37735306-37735416)
chr3 (577-675)||(41544675-41544773)
chr3 (559-628)||(3811522-3811591)
chr3 (698-751)||(14745118-14745171)
chr3 (784-829)||(27841549-27841594)
chr3 (564-693)||(41263638-41263766)
chr3 (580-672)||(37736089-37736181)
chr3 (698-829)||(3208630-3208759)
chr3 (564-671)||(40244187-40244294)
chr3 (590-674)||(36176512-36176597)
[»] scaffold0019 (2 HSPs)
scaffold0019 (564-674)||(61851-61961)
scaffold0019 (565-693)||(63118-63246)
[»] scaffold2071 (1 HSPs)
scaffold2071 (697-792)||(559-653)
[»] scaffold0118 (1 HSPs)
scaffold0118 (698-829)||(43416-43544)
[»] scaffold0011 (1 HSPs)
scaffold0011 (564-695)||(127433-127564)
[»] scaffold0031 (3 HSPs)
scaffold0031 (578-675)||(123983-124080)
scaffold0031 (578-675)||(125238-125335)
scaffold0031 (697-792)||(125108-125203)
[»] scaffold0077 (2 HSPs)
scaffold0077 (698-829)||(54025-54154)
scaffold0077 (564-674)||(54191-54301)
[»] scaffold0034 (1 HSPs)
scaffold0034 (612-675)||(108561-108624)
[»] scaffold0078 (1 HSPs)
scaffold0078 (585-676)||(18833-18924)
[»] scaffold1251 (1 HSPs)
scaffold1251 (564-630)||(1135-1201)
[»] scaffold0201 (1 HSPs)
scaffold0201 (600-674)||(21163-21237)


Alignment Details
Target: chr1 (Bit Score: 573; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Complemental strand, 45000126 - 44999315
Alignment:
Q  8 gttgtaagacaaggacatgttaggtctcatagtgttccaacaacctcgtaccctgctccatatagaatgtccttagattaccaacaccaccaaggaatga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45000126 gttgtaagacaaggacatgttaggtctcatagtgttccaacaacctcgtaccctgctccatatagaatgtccttagattaccaacaccaccaaggaatga 45000027  T
Q  108 ggtttctcaagaagtcttctatagaatctttgtctagtagcagcaggttttggaaagtgaagttggtgattagtccagaacagttgatggaaattttggc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45000026 ggtttctcaagaagtcttctatagaatctttgtctagtagcagcaggttttggaaagtgaagttggtgattagtccagaacagttgatggaaattttggc 44999927  T
Q  208 acaagaggctagaacaaaagagttgatagagagtgtaaggattgtagcaaaatgtggtgacatttcatctgcagctgaagacattgcttctgatcagtgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44999926 acaagaggctagaacaaaagagttgatagagagtgtaaggattgtagcaaaatgtggtgacatttcatctgcagctgaagacattgcttctgatcagtgg 44999827  T
Q  308 agcctttcca--acaagttggagcatttcatctaaatcaaaataaacaagtaatttgttgaaacattagtgacnnnnnnnnnnnnnnnnnnnnnnnnngg 405  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         ||    
T  44999826 agcctttccaacacaagttggagcatttcatctaaatcaaaataaacaagtaatttgttgaaacattagtgacttttttctgtctcttttctttttttgg 44999727  T
Q  406 ttaattactttgcttcaatacttctttatatgtatgcaattatgtatgtatcatattatgtttcttctttaaaattcaatgtagatctttttcatataac 505  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44999726 ttaattactttgcttcaatacttttttatatgtatgcaattatgtatgtatcatataatgtttcttctttaaaattcaatgtagatctttttcatataac 44999627  T
Q  506 attgtagaatttctgtgtatctgcgtgttgtagaatactgtaa-nnnnnnnnnctttgtcttattagatcatttggtcccttaaataatttaatgttttc 604  Q
    |||||||||||||||||||||||||||||||||||||||||||          ||||| |||||||||||| ||||||||||||||||          ||    
T  44999626 attgtagaatttctgtgtatctgcgtgttgtagaatactgtaattttttttttctttggcttattagatcacttggtcccttaaataa----------tc 44999537  T
Q  605 gttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacctta------- 697  Q
    |||||||||||| ||||||||||| |||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||           
T  44999536 gttttagtcccacaattaataaaattggcgttttcgtc-ctcattttttcctctgtttgccaaataaatccctagctgttaactttaaccttaaatgtct 44999438  T
Q  698 ----tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattac 793  Q
        ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44999437 atggtggaccaatcgtaagagtggttcaccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattac 44999338  T
Q  794 acaagtctattatatcttacgat 816  Q
     ||||||||||||||||||||||    
T  44999337 gcaagtctattatatcttacgat 44999315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 15232752 - 15232862
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||| |||||||||||||||||| |||||||||  || ||||  ||||||| ||||||    
T  15232752 cttattagatcatttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctctgtttg 15232851  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  15232852 ccaaataaatc 15232862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 559 - 676
Target Start/End: Complemental strand, 15234162 - 15234045
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||      
T  15234162 tttggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctcc 15234063  T
Q  659 gtttgccaaataaatccc 676  Q
    ||||||||||||||||||    
T  15234062 gtttgccaaataaatccc 15234045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 564 - 675
Target Start/End: Original strand, 49801617 - 49801728
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  |||||| || ||||| |||| |||||| ||||||||||| ||| ||||||||| ||||  |||  || ||||||    
T  49801617 cttattagatcatttggtcccttatttaattttatattttcattttggtcccacaattaataaaaatggtgttttgatccctcacgtttgtctctgtttg 49801716  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  49801717 ccaaataaatcc 49801728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 581 - 676
Target Start/End: Original strand, 27814309 - 27814404
Alignment:
Q  581 tcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc 676  Q
    ||||| ||||||||| | |||||| ||||||||| ||||||||||||||   | ||||| || ||||||||||||| |||||||||||||||||||    
T  27814309 tccctcaaataatttcaagttttcattttagtcctataattaataaaacgtaccttttggtccctcattttttcctctgtttgccaaataaatccc 27814404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 564 - 673
Target Start/End: Original strand, 16963834 - 16963943
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||||||  |||| |||||| |||||||| |||| |||||| ||||||||||| ||| |||||  || ||||| |||||||  |||||    
T  16963834 cttattagatcgtttggtcttttaattaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccctcatcttttcctccgtttg 16963933  T
Q  664 ccaaataaat 673  Q
    ||||||||||    
T  16963934 ccaaataaat 16963943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 568 - 676
Target Start/End: Complemental strand, 49803007 - 49802899
Alignment:
Q  568 ttagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaa 667  Q
    ||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| || ||||||  || ||||| |||| ||  |||||||||    
T  49803007 ttagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgacgttttagtccctcatctttttctccgtttgccaa 49802908  T
Q  668 ataaatccc 676  Q
    |||||||||    
T  49802907 ataaatccc 49802899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 578 - 690
Target Start/End: Complemental strand, 46111590 - 46111479
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    |||||||||||||||||| | |||||  |||| |||||| ||||||||||||   | ||||| |  |||||||||||||  ||||||||||||||||||     
T  46111590 tggtcccttaaataatttcaagtttttattttggtcccacaattaataaaacgtaccttttggttcctcattttttccttcgtttgccaaataaatcccg 46111491  T
Q  678 agctgttaacttt 690  Q
    | |||||||||||    
T  46111490 a-ctgttaacttt 46111479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 709 - 811
Target Start/End: Original strand, 48527690 - 48527790
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||||||| ||||||||||| |||| |  ||||||||  |||||| ||| ||||||||||||||||  ||||| |||| |||    
T  48527690 taagagtggtccaccatagatcttatcaattattttaatttaaactgtttgatct--tttttttaaatgatgaccattggattatgcaagtgtattttat 48527787  T
Q  809 ctt 811  Q
    |||    
T  48527788 ctt 48527790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 579 - 674
Target Start/End: Complemental strand, 52628974 - 52628879
Alignment:
Q  579 ggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    ||||||||||||||||| | |||||  |||| |||||| ||||||||||||   | ||||| || |||||||||||||  ||||||||||||||||    
T  52628974 ggtcccttaaataatttcaagttttaattttggtcccacaattaataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatc 52628879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 586 - 692
Target Start/End: Original strand, 16123309 - 16123415
Alignment:
Q  586 taaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgtta 685  Q
    |||||||||||| |||||| |||| || ||| ||||||||||| |  ||||||  || ||||||||||| |  ||||||||||||||||||| | |||||    
T  16123309 taaataatttaaagttttcattttggttccacaattaataaaattcacgttttagtccctcattttttcttccgtttgccaaataaatccctggttgtta 16123408  T
Q  686 actttaa 692  Q
    | |||||    
T  16123409 agtttaa 16123415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 577 - 675
Target Start/End: Complemental strand, 24499758 - 24499660
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| |||||||||| | |||||| |||| ||| || |||||||||||||  ||||||| || |||| ||||||||  |||| ||||||||||||    
T  24499758 ttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaactcacgttttggtccctcactttttcctccgtttaccaaataaatcc 24499660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 590 - 695
Target Start/End: Complemental strand, 15072880 - 15072775
Alignment:
Q  590 taatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactt 689  Q
    |||||| | |||||| |||| |||||| ||||||||||||   | ||||| || || ||||||||||  ||||||||||||||||| |  ||||||||||    
T  15072880 taatttcaagttttcattttggtcccacaattaataaaacgtacattttggtcccttattttttcctccgtttgccaaataaatccatgtctgttaactt 15072781  T
Q  690 taacct 695  Q
    ||||||    
T  15072780 taacct 15072775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 578 - 675
Target Start/End: Complemental strand, 50444800 - 50444703
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| ||||||||| |  ||||| ||||||||||| ||||||||||||   | ||||| || |||||||||||||  | |||||||||||||||    
T  50444800 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgtacattttggtccctcattttttcctccgattgccaaataaatcc 50444703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 675
Target Start/End: Original strand, 15071355 - 15071453
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| |||||||||| | |||||| |||| ||| |||||||||||||||    |||||| || |||| ||||||||  |||| ||||||||||||    
T  15071355 ttggtcccctaaataatttcaagttttcattttggtcacataattaataaaacgtatgttttggtccctcactttttcctccgtttaccaaataaatcc 15071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 578 - 822
Target Start/End: Complemental strand, 35943549 - 35943295
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc- 676  Q
    ||||| |||||||||||| |  ||||  |||| |||||| ||||||||||||   | ||||| || |||| ||||||||  ||||||||||||||||||     
T  35943549 tggtctcttaaataatttcaaatttttattttggtcccacaattaataaaacgtacattttggtc-ctcactttttccttcgtttgccaaataaatcccc 35943451  T
Q  677 tagctgttaactttaacctta-----------tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaag-ccatttgatctt 764  Q
    | |||||||| ||||||| ||           |||||||| | |||||||| | | ||||||| |||||||| | |||||  ||||  || |||||||||    
T  35943450 tggctgttaagtttaaccctaaatgtctatggtggaccaaccttaagagtgatccaccatagaccttattaaattttttattttaaaaccgtttgatctt 35943351  T
Q  765 gttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacca 822  Q
      ||||| ||| ||||||||||| ||||| || ||||||| |||||||||||| ||||    
T  35943350 --tttttgaaaggatgaccattgaattacgcaggtctattttatcttacgatgaacca 35943295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 809
Target Start/End: Complemental strand, 7306202 - 7306116
Alignment:
Q  722 ccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatc 809  Q
    |||||||||||||||||| |||||| || ||||||||||| |  |||||| |||||| ||||| | |||||||||  |||||| ||||    
T  7306202 ccatagatcttattaattcttttaattttagccatttgat-tgttttttttaaaagaggaccaattgattacacatttctattttatc 7306116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 744
Target Start/End: Original strand, 9482611 - 9482646
Alignment:
Q  709 taagagtggttctccatagatcttattaattatttt 744  Q
    |||||||||||| |||||||||||||||||||||||    
T  9482611 taagagtggttcaccatagatcttattaattatttt 9482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 580 - 694
Target Start/End: Original strand, 50442640 - 50442754
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctag 679  Q
    |||||| ||||||||| |||||||  |||| ||| || ||||||||||||   | |||||||  ||||  ||||||| |||||| ||||||||||  |      
T  50442640 gtccctcaaataattttatgtttttattttggtctcacaattaataaaacgtacattttgattcctcaccttttcctctgtttgtcaaataaatctttga 50442739  T
Q  680 ctgttaactttaacc 694  Q
    |||||||||||||||    
T  50442740 ctgttaactttaacc 50442754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 6e-43; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 564 - 697
Target Start/End: Complemental strand, 12359795 - 12359662
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||  | |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||| |||| |    
T  12359795 cttattagatcaccttgtcccttaaataatttcatgttttcgttttagtcccacaattaataaaattggcgttttggtccctcattttttcctttgttcg 12359696  T
Q  664 ccaaataaatccctagctgttaactttaacctta 697  Q
    |||||||||||| |||||||||||||||||||||    
T  12359695 ccaaataaatccgtagctgttaactttaacctta 12359662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 564 - 677
Target Start/End: Original strand, 6030605 - 6030718
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| ||||||||||| ||||||||||| |||||||||  |  || ||||||||||  |||||    
T  6030605 cttattagatcgtttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaattggcgttttagttccttattttttcctccgtttg 6030704  T
Q  664 ccaaataaatccct 677  Q
    ||||||||||||||    
T  6030705 ccaaataaatccct 6030718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 564 - 829
Target Start/End: Complemental strand, 18617122 - 18616846
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||||||| |||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  18617122 cttattagatcatttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgtttg 18617023  T
Q  664 ccaaataaatccctagctgttaactttaacc--------------ttatggaccaatcgtaagagtggttctccatagatcttattaattattttaactt 749  Q
    ||||||||||||| | || |||| |||||||              |  ||||||| || ||| |||||| | ||||||||| ||||||||||||||| ||    
T  18617022 ccaaataaatccc-aactattaagtttaaccccaaatgatgtctatggtggaccagtcttaaaagtggtccaccatagatcctattaattattttaattt 18616924  T
Q  750 aagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
     | || |||||  || |||||  ||||||  |||||||||||| | | ||||||| ||||||||||||||||||||||||    
T  18616923 caaccgtttga--ttttttttaaaaaagagaaccattggattagataggtctattttatcttacgatgtaccaccaacac 18616846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 694
Target Start/End: Original strand, 29219385 - 29219514
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||||||| |||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  29219385 cttattagatcgtttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgtttg 29219484  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
    ||||||||||||| | ||||||| |||||||    
T  29219485 ccaaataaatccc-aactgttaagtttaacc 29219514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 694
Target Start/End: Original strand, 29332684 - 29332813
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||||||| |||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  29332684 cttattagatcgtttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgtttg 29332783  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
    ||||||||||||| | ||||||| |||||||    
T  29332784 ccaaataaatccc-aactgttaagtttaacc 29332813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 34468958 - 34469068
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| ||| || ||||||||||| || ||||||  || ||||  ||||| | ||||||    
T  34468958 cttattagatcgtttggtcccttatttaatttcatgttttcattttggtcgcacaattaataaaaatgacgttttagtccctcacattttcttctgtttg 34469057  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  34469058 ccaaataaatc 34469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 694
Target Start/End: Original strand, 44191136 - 44191266
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||| |||| |||||||||||||  |||||| |||||||| ||||||||||| ||||||||||| | || ||||  || |||||  |||||  ||||||    
T  44191136 cttataagattatttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaaattgcattttagtccctcatcgtttccactgtttg 44191235  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
     |||||||||||||  ||||| | |||||||    
T  44191236 tcaaataaatccctgcctgtttagtttaacc 44191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 29220992 - 29220880
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| || ||||| |||| |||||| ||||||||||| |||| ||||  || || |  ||||||| ||||||    
T  29220992 cttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggctttttagtcccttacattttcctctgtttg 29220893  T
Q  664 ccaaataaatccc 676  Q
    |||||| ||||||    
T  29220892 ccaaattaatccc 29220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 29334291 - 29334179
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| || ||||| |||| |||||| ||||||||||| |||| ||||  || || |  ||||||| ||||||    
T  29334291 cttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggctttttagtcccttacattttcctctgtttg 29334192  T
Q  664 ccaaataaatccc 676  Q
    |||||| ||||||    
T  29334191 ccaaattaatccc 29334179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 1085502 - 1085394
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||  ||||||||||||  |||||| |||||||| |||| || ||| | ||||||||| |||||||||| || ||||  |||||||  |||||    
T  1085502 cttattagattgtttggtcccttatttaatttcatgttttcattttggtaccacatttaataaaattggcgttttggtccctca--ttttcctccgtttg 1085405  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  1085404 ccaaataaatc 1085394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 581 - 675
Target Start/End: Original strand, 43033099 - 43033193
Alignment:
Q  581 tcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||||||||||| | |||||| |||| |||||| ||||||||||||   | ||||| || |||| ||||||||  |||||||||||||||||    
T  43033099 tcccttaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcc 43033193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 1082988 - 1083116
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||| ||| ||||||||||||  |||||| || ||||| |||| |||||| | ||||||||| ||| |||||| ||  |||| |||| ||  |||||    
T  1082988 cttattatatcgtttggtcccttatttaatttcatattttcattttggtcccacatttaataaaaatggtgttttggtccgtcatctttttctccgtttg 1083087  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    |||| |||||||| || |||||||||||||    
T  1083088 ccaattaaatcccaag-tgttaactttaac 1083116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 675
Target Start/End: Original strand, 249019 - 249135
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||||||||||||||||| | ||||  | ||||| |||| |||||||| ||||||||| || ||  ||| || ||||  |||| || |    
T  249019 tttggcttattagatcatttggtcccttaagttatttcttattttcattttggtcccatatttaataaaaatgtcgaattggtccctcaaattttgctct 249118  T
Q  659 gtttgccaaataaatcc 675  Q
    |||||||||| ||||||    
T  249119 gtttgccaaaaaaatcc 249135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 559 - 693
Target Start/End: Complemental strand, 6032435 - 6032301
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| |||| ||| |||   ||||| |||||||  |||| || ||| ||||||||||| ||| |||||  || |  |||||||||| |    
T  6032435 tttggcttattagatcgtttgatcctttattcaatttcatgtttttattttggttccacaattaataaaaatggtgttttagtcccgtattttttcctct 6032336  T
Q  659 gtttgccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||||||| |  | ||||||||||||    
T  6032335 gtttgccaaataaatccatgaccgttaactttaac 6032301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 675
Target Start/End: Original strand, 11547672 - 11547770
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||| ||||||||||| | |||||| |||| ||| |||||||||||||||    ||||| | | |||||||||||||  ||||| |||||||||||    
T  11547672 ttggtcctttaaataatttcaagttttcattttggtctcataattaataaaacacatgttttaacccctcattttttccttcgtttgtcaaataaatcc 11547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 675
Target Start/End: Complemental strand, 28562911 - 28562814
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| ||||||||| |  ||||| |||| |||||||||||||||||||   | ||||| || |||| ||||||||  ||||| |||||||||||    
T  28562911 tggtccctcaaataatttcaaattttcattttggtcccataattaataaaacataccttttggtccctcactttttcctccgtttgtcaaataaatcc 28562814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 829
Target Start/End: Original strand, 29219532 - 29219660
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||||| ||| |||||| | ||||||||| ||||||||||||||| || | || |||||| ||        ||||||  |||||||||||| | |     
T  29219532 tggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaaaaa---aaaagagaaccattggattagatag 29219628  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| ||||||||||||||||||||||||    
T  29219629 gtctattttatcttacgatgtaccaccaacac 29219660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 829
Target Start/End: Original strand, 29332831 - 29332959
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||||| ||| |||||| | ||||||||| ||||||||||||||| || | || |||||| ||        ||||||  |||||||||||| | |     
T  29332831 tggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaaaaa---aaaagagaaccattggattagatag 29332927  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| ||||||||||||||||||||||||    
T  29332928 gtctattttatcttacgatgtaccaccaacac 29332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 673
Target Start/End: Complemental strand, 44192562 - 44192453
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||  ||||||||||||  |||||| |||||||| ||||  ||||| ||||||||||| |||| ||||  || ||||  |||||||  |||||    
T  44192562 cttattagattgtttggtcccttatttaatttcatgttttcattttgatcccaaaattaataaaaatggcattttagtccctcacattttcctccgtttg 44192463  T
Q  664 ccaaataaat 673  Q
     |||||||||    
T  44192462 tcaaataaat 44192453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 564 - 676
Target Start/End: Original strand, 18615516 - 18615628
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| || ||||| |||| ||| || ||||||||||| |||| ||||  || |  |  |||||||  |||||    
T  18615516 cttattagatcgtttggtcccttatttaatttcatattttcattttggtctcacaattaataaaaatggctttttagtcccctacattttcctccgtttg 18615615  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  18615616 ccaaataaatccc 18615628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 823
Target Start/End: Original strand, 7436668 - 7436735
Alignment:
Q  756 tttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccac 823  Q
    ||||||||| |||||  |||||| |||| ||||||||||||  |||||| ||||||| ||||||||||    
T  7436668 tttgatcttttttttaaaaaagaggaccgttggattacacatatctattttatcttaggatgtaccac 7436735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 2276281 - 2276347
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| ||||||||||||| |||||||||   |||||| ||||||||| |||| ||||||||||    
T  2276281 cttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaact 2276347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 34147136 - 34147202
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| ||||||||||||| |||||||||   |||||| |||| ||||||||| ||||||||||    
T  34147136 cttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaact 34147202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 34148476 - 34148410
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| ||||||||||||| |||||||||   |||||| ||||||| |||||| ||||||||||    
T  34148476 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaact 34148410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 580 - 673
Target Start/End: Original strand, 17459269 - 17459362
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaat 673  Q
    |||||||||||||||| | |||||| |||| ||| || ||||||||||||   |||||   || |||| ||||||||  |||||||||||||||    
T  17459269 gtcccttaaataatttcaagttttcattttggtcacacaattaataaaacgtacgtttaagtccctcactttttcctccgtttgccaaataaat 17459362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 628
Target Start/End: Original strand, 26134827 - 26134880
Alignment:
Q  575 atttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaa 628  Q
    |||||||||||||| |||||||| | ||| ||||| ||||| ||||||||||||    
T  26134827 atttggtcccttaattaatttaaagattttgtttttgtcccttaattaataaaa 26134880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 559 - 628
Target Start/End: Original strand, 35903503 - 35903572
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaa 628  Q
    |||| |||| ||| ||||||||||| |||| |||||| | |||||| |||| ||||||||| ||||||||    
T  35903503 tttggcttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataactaataaaa 35903572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 578 - 695
Target Start/End: Complemental strand, 43034573 - 43034457
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    |||||||| ||||||||| | |||||| ||||| || || ||||||||||||   | ||||| || |||| ||||||||  ||||| ||||||||| | |    
T  43034573 tggtccctcaaataatttcaagttttcattttaatctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgtcaaataaat-ctt 43034475  T
Q  678 agctgttaactttaacct 695  Q
     |||||||| ||||||||    
T  43034474 cgctgttaagtttaacct 43034457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 564 - 829
Target Start/End: Complemental strand, 22308915 - 22308640
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||| |||||||||| |||||||| |||| ||||||||||||||||||| ||||||||  || ||||  |||| ||  |||||    
T  22308915 cttattagatcgtttggtcccctaaataatttcatgttttcattttggtcccataattaataaaacaggcgttttagtccctcacattttgctccgtttg 22308816  T
Q  664 ccaaataaatccctagctgttaactttaacc-----------ttatggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaag 752  Q
    |||||||||||| | | |||||| |||||||           |  |||||| | | |||||||||| | |||||||  ||||||| | ||||||  |||     
T  22308815 ccaaataaatccatggttgttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttttaatgtaaa 22308716  T
Q  753 ccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    |||||||||| |||||||| ||||||||||||||||||||  || ||||||| |  |||||| ||||||| ||||||    
T  22308715 ccatttgatc-tgttttttaaaaagatgaccattggattatgcatgtctattgttacttacggtgtaccaacaacac 22308640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 698 - 829
Target Start/End: Complemental strand, 30859141 - 30859011
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||||| |||||||||| | ||||||||| ||||||||||||||| |||| || |||||| ||  ||||| ||||||  |||||||||||| ||||    
T  30859141 tggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat-tttctttttaaaaagagaaccattggattagacaa 30859043  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| |||||||| || ||||||||||||    
T  30859042 gtctattttatcttacaatataccaccaacac 30859011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 564 - 829
Target Start/End: Original strand, 30910741 - 30911017
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  ||||||| |||||     
T  30910741 cttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctctgttta 30910840  T
Q  664 ccaaataaatccctagctgttaactttaac------------ctt--atggaccaatcgtaagagtggttctccatagatcttattaattattttaactt 749  Q
    ||||||||||| | | ||||||||||||||            |||   |||||||| | |||||||||| | ||||||||| ||||||||||||||| ||    
T  30910841 ccaaataaatctcga-ctgttaactttaacaccaaatgatgtctttggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattt 30910939  T
Q  750 aagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
     | || |||||   | ||| || ||||||  ||||||| ||||  || ||||||| ||||||||||||||||||||||||    
T  30910940 caaccgtttga--gtttttctttaaaagagaaccattgaattaggcatgtctattttatcttacgatgtaccaccaacac 30911017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 559 - 677
Target Start/End: Original strand, 22307503 - 22307621
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| ||||||||| |||| ||||| |||||||| |||| || |||||||||||||||| || |||||  || |||| ||||| || |    
T  22307503 tttggcttattagatcgtttggtcccctaaacaatttcatgttttcattttggttccataattaataaaacaggtgttttagtccctcactttttgctct 22307602  T
Q  659 gtttgccaaataaatccct 677  Q
    |||||||||||||||||||    
T  22307603 gtttgccaaataaatccct 22307621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 564 - 694
Target Start/End: Complemental strand, 33174076 - 33173946
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| ||||  ||||| | ||||||||| |||||||||  || ||||  ||||||| ||||||    
T  33174076 cttattagatcgtttggtcccttatttaatttcatgttttcattttgatcccacatttaataaaaatggcgttttagtccctcaccttttcctctgtttg 33173977  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
    |||||||||||| | |||||||| |||||||    
T  33173976 ccaaataaatccttggctgttaagtttaacc 33173946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 578 - 829
Target Start/End: Original strand, 22047746 - 22048010
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    ||||||||||| |||||| | |||||| |||| |||||| ||||||||||||   ||||||| || |||||||||||||  ||||||||||||||| |||    
T  22047746 tggtcccttaattaatttcaagttttcattttggtcccacaattaataaaacgtacgttttggtccctcattttttcctccgtttgccaaataaat-cct 22047844  T
Q  678 agctgttaactttaacctta--------------tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatct 763  Q
     |||||||| ||||||  ||              |||| ||| | |||||||||| | ||||| ||| ||| ||||||||||| |||| || |||||| |    
T  22047845 ggctgttaagtttaactctaaatgatgtctatggtggatcaaccttaagagtggtccaccataaatcctatgaattattttaatttaaaccgtttgattt 22047944  T
Q  764 tgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    | |||||| ||||||  ||||||| |||| | | ||||||| |||||||| |||||||| ||||||    
T  22047945 ttttttttgaaaagagaaccattgaattagaaaggtctattttatcttacaatgtaccatcaacac 22048010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 580 - 694
Target Start/End: Complemental strand, 22049236 - 22049123
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctag 679  Q
    ||||| |||||||||| | |||||| |||| |||||||||||||||||||   ||||||| || |||| |||||||| |||||| ||||||||||||| |    
T  22049236 gtcccctaaataatttcaagttttcattttggtcccataattaataaaacgtacgttttggtccctcactttttcctctgtttggcaaataaatccct-g 22049138  T
Q  680 ctgttaactttaacc 694  Q
    ||||||| |||||||    
T  22049137 ctgttaagtttaacc 22049123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 30912278 - 30912150
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||| ||||||||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||| ||  |||||    
T  30912278 cttattagatcgtttagtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttagtccctcacctttttctccgtttg 30912179  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||| || |||||||||||||    
T  30912178 ccaaataaatcccaag-tgttaactttaac 30912150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 700 - 814
Target Start/End: Original strand, 1102765 - 1102877
Alignment:
Q  700 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagt 799  Q
    |||||| | |||||||||| | ||||||||||||||||||||||||| |||| || ||||||||  |||||| ||| |||||||| |||||||  |||||    
T  1102765 gaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgatct--tttttttaaatgatgaccagtggattatgcaagt 1102862  T
Q  800 ctattatatcttacg 814  Q
     |||| |||||||||    
T  1102863 gtattttatcttacg 1102877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 734 - 829
Target Start/End: Complemental strand, 36898916 - 36898819
Alignment:
Q  734 ttaattattttaacttaagccatttgatcttgtttt-ttc-aaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||||||||  |||| || |||||| || |||| ||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  36898916 ttaattattttagtttaaaccctttgatttttttttcttctaaaagatgaccattggattacgcatgtctattttatcttacgatgtaccaccaacac 36898819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 578 - 693
Target Start/End: Complemental strand, 325287 - 325173
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    |||||||| ||||||||| | |||||| |||| |||||| ||||||||||||   | ||||| || ||||  |||||||  ||||||||||||||||||     
T  325287 tggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggtccctcaagttttcctccgtttgccaaataaatcccg 325188  T
Q  678 agctgttaactttaac 693  Q
    | ||||||||||||||    
T  325187 a-ctgttaactttaac 325173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 9169586 - 9169652
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| |||||||| ||||||| |||||| | |||||| |||||||||||||||||||||||||    
T  9169586 cttaataggtcatttggccccttaattaatttcaagttttcattttagtcccataattaataaaact 9169652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 770
Target Start/End: Original strand, 11262538 - 11262610
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttt 770  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||| ||| |||| |||||||||||| |||||    
T  11262538 tggaccaaccttaagagtggtccaccatagatcctattaattattataatttaaaccatttgatctttttttt 11262610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 8521255 - 8521321
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| |||||||||||||||| |||||| | |||||| |||| ||||||||| ||||||||||    
T  8521255 cttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaact 8521321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 562 - 674
Target Start/End: Original strand, 39603851 - 39603963
Alignment:
Q  562 gtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtt 661  Q
    |||||||| ||||  ||| ||||| ||||||||| | |||||| ||||  ||||| ||||||||||||   ||||||| || ||||  |||||||  |||    
T  39603851 gtcttatttgatccattgatccctcaaataatttcaagttttcattttgatcccacaattaataaaacgtacgttttggtccctcaaattttcctccgtt 39603950  T
Q  662 tgccaaataaatc 674  Q
    |||||||||||||    
T  39603951 tgccaaataaatc 39603963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 1010480 - 1010414
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| |||||||||||||||| |||||| | |||||  |||| ||||||||| ||||||||||    
T  1010480 cttaataggtcatttggtcccttaattaatttcaagtttttattttggtcccataactaataaaact 1010414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 8523862 - 8523796
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| |||||||||||| ||| |||||| | |||||| |||| ||||||||| ||||||||||    
T  8523862 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaact 8523796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 32759164 - 32759098
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| ||||||||||||| |||||||||   |||||| ||||||| |||||| ||||||||||    
T  32759164 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaact 32759098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 573 - 630
Target Start/End: Original strand, 32757834 - 32757891
Alignment:
Q  573 tcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    ||||||||||||| |||||||||   |||||| |||| ||||||||| ||||||||||    
T  32757834 tcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaact 32757891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 675
Target Start/End: Complemental strand, 39605559 - 39605474
Alignment:
Q  590 taatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||| | |||||| |||| |||||| ||||||||||||   ||||||| || ||||  |||||||  |||||||||||||||||    
T  39605559 taatttcaagttttcattttggtcccacaattaataaaacatacgttttggtccctcagattttcctccgtttgccaaataaatcc 39605474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 566 - 694
Target Start/End: Original strand, 50546908 - 50547036
Alignment:
Q  566 tattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgcc 665  Q
    ||||||||||||||||||||||  |||||| |||| ||| ||||||||||| ||||||||||| |||||||||  || ||||| ||||||   |||||||    
T  50546908 tattagatcatttggtcccttatttaatttcatgtcttcattttagtcccacaattaataaaaatggcgttttagtccctcatcttttccaccgtttgcc 50547007  T
Q  666 aaataaatccctagctgttaactttaacc 694  Q
    ||||||||||||| ||||||| |||||||    
T  50547008 aaataaatccctacctgttaagtttaacc 50547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 566 - 677
Target Start/End: Original strand, 53204363 - 53204474
Alignment:
Q  566 tattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgcc 665  Q
    |||||||||||||| |||||||||||||||||||||||| ||||  || || |||||||||||| ||||||||  |  |||| ||||| ||  |||||||    
T  53204363 tattagatcatttgatcccttaaataatttaatgttttcattttgatctcacaattaataaaacaggcgttttagttcctcaattttttctccgtttgcc 53204462  T
Q  666 aaataaatccct 677  Q
    ||||||||||||    
T  53204463 aaataaatccct 53204474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 694
Target Start/End: Complemental strand, 10168899 - 10168769
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||||||| |||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  10168899 cttattagatcgtttggtccattatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctccgtttg 10168800  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
    |||||||||||| |  | |||||||||||||    
T  10168799 ccaaataaatccatgacagttaactttaacc 10168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 694
Target Start/End: Original strand, 33231389 - 33231519
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  |||||| |||||||| ||||||||||| ||||||||||| ||| |||||  || ||||| |||| |   |||||    
T  33231389 cttattagatcatttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaaatggtgttttagtccctcatctttttcaccgtttg 33231488  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
    |||||||||| | ||  |||||| |||||||    
T  33231489 ccaaataaattcatacttgttaagtttaacc 33231519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 709 - 829
Target Start/End: Original strand, 44498617 - 44498736
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| | || || |||||| || ||| || |||||||||||||| |||||| || ||||||| |||    
T  44498617 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttctt-aaaagatgaccattagattacgcatgtctattttat 44498715  T
Q  809 cttacgatgtaccaccaacac 829  Q
    |||| |||||| |||||||||    
T  44498716 cttaggatgtatcaccaacac 44498736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 698 - 829
Target Start/End: Complemental strand, 2312451 - 2312323
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||||| ||| |||||| | ||||||||| ||||||||||||||| |||| |  |||||   | |||||| ||||||  |||||||||||| |||     
T  2312451 tggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttga---ttttttttaaaaagagaaccattggattagacag 2312355  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    | ||||| ||||||| ||||||||||||||||    
T  2312354 gcctattttatcttatgatgtaccaccaacac 2312323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 558 - 693
Target Start/End: Complemental strand, 23204075 - 23203941
Alignment:
Q  558 ctttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttccta 657  Q
    ||||| ||||||||||| ||||||||||||  |||||| || ||||| |||| |||||| | ||||||||| |||||||||| ||  |||| |||| ||     
T  23204075 ctttggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacatttaataaaaatggcgttttggtccgtcatctttttctc 23203976  T
Q  658 tgtttgccaaataaatccctagctgttaactttaac 693  Q
     ||||||||| |||||||| || | |||||||||||    
T  23203975 cgtttgccaattaaatcccaag-tattaactttaac 23203941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 565 - 675
Target Start/End: Original strand, 7707589 - 7707699
Alignment:
Q  565 ttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgc 664  Q
    |||||||||| ||| ||||||||  |||||| |||||||| |||| |||||| ||||||||||| || ||||||  ||  |||  ||||||| |||||||    
T  7707589 ttattagatcttttagtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgacgttttagtccatcacattttcctctgtttgc 7707688  T
Q  665 caaataaatcc 675  Q
    |||||||||||    
T  7707689 caaataaatcc 7707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 700 - 829
Target Start/End: Original strand, 7707737 - 7707864
Alignment:
Q  700 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagt 799  Q
    |||||| | |||||||||| | ||||||||| ||||||||||||||| || | || |||||| || | |||  ||||||  ||||||||||||  || ||    
T  7707737 gaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttcttt--aaaagagaaccattggattaggcaggt 7707834  T
Q  800 ctattatatcttacgatgtaccaccaacac 829  Q
    ||||| ||||||||||||||||| ||||||    
T  7707835 ctattttatcttacgatgtaccatcaacac 7707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 559 - 693
Target Start/End: Original strand, 13165491 - 13165624
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| |||||||| |||  |||||| |||||||| |||| ||||| |||||||||||| |||||||||  ||  |||| |||||||      
T  13165491 tttggcttattagatcgtttggtccattatttaatttcatgttttcattttggtccc-taattaataaaaatggcgttttcgtccttcatcttttcctcc 13165589  T
Q  659 gtttgccaaataaatccctagctgttaactttaac 693  Q
    ||||| ||||||||||| |  ||||||| ||||||    
T  13165590 gtttgtcaaataaatccttgactgttaagtttaac 13165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 677
Target Start/End: Original strand, 10167425 - 10167538
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| || ||| ||||||||||| | || ||||  || ||||| |||||||  |||||    
T  10167425 cttattagatcgtttggtcccttatttaatttcatgttttcattttggtaccacaattaataaaaattgcattttagtccctcatattttcctccgtttg 10167524  T
Q  664 ccaaataaatccct 677  Q
     |||||||||||||    
T  10167525 tcaaataaatccct 10167538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 54485661 - 54485532
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||| || ||||| |||||||||| | |||||| ||||  ||||||||||||||||||   |||||||||| ||||  ||||| |  |||||    
T  54485661 cttaatagatcacttagtcccctaaataatttcaagttttcattttgatcccataattaataaaacattcgttttgatccctcaagttttcatccgtttg 54485562  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | | || |||||||||||    
T  54485561 ccaaataaatcacaaactattaactttaac 54485532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 7708906 - 7708776
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgt--tttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtt 661  Q
    ||||||||||| ||||||||||||  |||||| ||||  |||| |||| || | | ||||||||||| |||||||||  || ||||  |||| || ||||    
T  7708906 cttattagatcgtttggtcccttatttaattttatgtgttttcattttggttctacaattaataaaagtggcgttttagtccctcacctttttctctgtt 7708807  T
Q  662 tgccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||||| || |||||||||||||    
T  7708806 tgccaaataaatcccaag-tgttaactttaac 7708776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 564 - 676
Target Start/End: Original strand, 23201846 - 23201958
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||  ||||||||||||  |||||| |||||||  |||| |||||| | ||||||||| |||| ||||| || ||||  |||||||  |||||    
T  23201846 cttattagattgtttggtcccttatttaatttcatgtttttattttggtcccacatttaataaaaatggcattttggtccctcaccttttcctccgtttg 23201945  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  23201946 ccaaataaatccc 23201958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 564 - 673
Target Start/End: Complemental strand, 1588205 - 1588096
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| |||| |||||||||| ||||||||| | |||||| ||||||||||| |||||||||||    |||||  ||| |||| ||||||||  ||||     
T  1588205 cttatttgatcttttggtccctcaaataattttaagttttcattttagtcccacaattaataaaatgtacgtttaaatccctcactttttcctccgttta 1588106  T
Q  664 ccaaataaat 673  Q
    ||||||||||    
T  1588105 ccaaataaat 1588096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 709 - 813
Target Start/End: Original strand, 56085503 - 56085605
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| |||| || |||||  || |||||| ||| ||||||| |||||| ||||| || |||| |||    
T  56085503 taagagtggtccaccatagatcctattaattattttaatttaaaccgtttga--tttttttttaaaaggatgaccgttggatcacacatgtgtattttat 56085600  T
Q  809 cttac 813  Q
    |||||    
T  56085601 cttac 56085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 674
Target Start/End: Original strand, 37882848 - 37882944
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||   | ||||| || ||||  |||||||  ||||||||||||||||    
T  37882848 tggtccctcaaataatttcaagttttcattttagtcccacaattaataaaacgtaccttttggtccctcaccttttcctccgtttgccaaataaatc 37882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 577 - 676
Target Start/End: Complemental strand, 1190295 - 1190196
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc 676  Q
    ||||||||| ||||||||| | |||||| |||| |||||||||||||||||||   |||||   |  |||| ||||| || |||||||||||||||||||    
T  1190295 ttggtccctcaaataattttaagttttcattttggtcccataattaataaaacgtacgtttaagtacctcacttttttctctgtttgccaaataaatccc 1190196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 675
Target Start/End: Original strand, 390230 - 390328
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| |||||||||| | |||||| |||| |||||| ||||||||||||     ||||| || ||||||| |||||  |||||||||||||||||    
T  390230 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtccctcatttcttcctccgtttgccaaataaatcc 390328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 2312598 - 2312488
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| ||||  ||||||||||| ||||||| | |||| | ||||||||||| ||||||||||||   |||||   || |||| ||||||||  |||||    
T  2312598 cttatttgatccattggtcccttagataatttcaagtttccattttagtcccacaattaataaaacgtacgtttaagtccctcactttttcctccgtttg 2312499  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  2312498 ccaaataaatc 2312488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 638
Target Start/End: Original strand, 4714019 - 4714093
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgtttt 638  Q
    ||||||||||| ||||||||||||  |||||| || ||||  |||| |||||| ||||||||||| |||||||||    
T  4714019 cttattagatcgtttggtcccttatttaatttcatatttttattttggtcccacaattaataaaaatggcgtttt 4714093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 709 - 814
Target Start/End: Original strand, 36845566 - 36845669
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | |||||| || |||||||||||||||  ||| |  |||||| |  |||||| ||||||||||||||||||||| || || |||| |||    
T  36845566 taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatat--tttttttaaaagatgaccattggattacgcaggtgtattttat 36845663  T
Q  809 cttacg 814  Q
    ||||||    
T  36845664 cttacg 36845669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 676
Target Start/End: Original strand, 1587197 - 1587294
Alignment:
Q  579 ggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc 676  Q
    ||||||| ||||||||| |  ||||| |||||||| || ||||||||||||   | ||||| || |||| ||||||||  ||||||||||||||||||    
T  1587197 ggtccctcaaataattttaaattttcattttagtctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatccc 1587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 673
Target Start/End: Original strand, 6348155 - 6348264
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| |||||  |||||||| ||||||||| | |||||| |||| |||||| ||||||||||||   | ||||| |  |||| |||||||| ||||||    
T  6348155 cttatttgatcaaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggttcctcactttttcctctgtttg 6348254  T
Q  664 ccaaataaat 673  Q
     |||||||||    
T  6348255 tcaaataaat 6348264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 674
Target Start/End: Original strand, 44501531 - 44501628
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    ||||||||| ||||||||| | |||||| || | |||||||||||||||||||   |||||   || |||| ||||| || |||||||||||||||||    
T  44501531 ttggtccctcaaataatttcaagttttcattctggtcccataattaataaaacgtacgtttaagtccctcacttttttctctgtttgccaaataaatc 44501628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 692
Target Start/End: Complemental strand, 53205576 - 53205471
Alignment:
Q  587 aaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaa 686  Q
    ||||||||| |  ||||| |||| |||||| |||||| ||||  ||||||||  || |||| ||||||||  ||||||||||||||||| | | ||||||    
T  53205576 aaataatttcagattttcattttcgtcccacaattaaaaaaataggcgttttagtccctcactttttcctccgtttgccaaataaatccatgggtgttaa 53205477  T
Q  687 ctttaa 692  Q
    ||||||    
T  53205476 ctttaa 53205471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 676
Target Start/End: Original strand, 1188859 - 1188955
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc 676  Q
    |||||| ||||||||| | |||||  |||| |||||| ||||||||||||   | ||||| || |||| ||||||||  ||||||||||||||||||    
T  1188859 gtccctcaaataatttcaagtttttattttggtcccacaattaataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatccc 1188955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 722 - 814
Target Start/End: Complemental strand, 38555226 - 38555134
Alignment:
Q  722 ccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacg 814  Q
    |||||||  ||||||| | |||||| |||| || ||||||||| ||| || ||| ||  |||||||||||||||| ||||||| |||||||||    
T  38555226 ccatagactttattaaattttttaatttaaaccgtttgatcttttttatttaaaggagaaccattggattacacatgtctattttatcttacg 38555134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 576 - 628
Target Start/End: Original strand, 54865117 - 54865169
Alignment:
Q  576 tttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaa 628  Q
    ||||||||||||  |||||| |||||||| |||| ||||||||||||||||||    
T  54865117 tttggtcccttatttaattttatgttttcattttggtcccataattaataaaa 54865169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 585 - 673
Target Start/End: Complemental strand, 55764430 - 55764342
Alignment:
Q  585 ttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaat 673  Q
    ||||||||||| | |||||| |||| ||  ||||||||||||||||  |||||||  ||||||  ||||| | ||||||||||||||||    
T  55764430 ttaaataatttcaagttttcatttttgtatcataattaataaaacttccgttttggccgctcaagttttcttttgtttgccaaataaat 55764342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 677
Target Start/End: Complemental strand, 1831365 - 1831266
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    |||||||| || |||||| | |||||| ||||||||||| ||||||||||||   | ||||| || |||||||||||||   |||  |||||||||||||    
T  1831365 tggtccctcaattaatttcaagttttcattttagtcccacaattaataaaacgtacattttggtccctcattttttcctccatttttcaaataaatccct 1831266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 693
Target Start/End: Original strand, 54484363 - 54484442
Alignment:
Q  614 ccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||||||   ||||||| || || |  ||||||| ||||||||||||||||| | | ||||||||||||||    
T  54484363 ccataattaataaaacgttcgttttggtccctaaaattttcctctgtttgccaaataaatctcaaactgttaactttaac 54484442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 674
Target Start/End: Complemental strand, 54866751 - 54866637
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| ||||||||||||  |||||| || ||||| |||| || ||| ||||||||||| ||| |||||  || || |  |||||||      
T  54866751 tttggcttattagatcgtttggtcccttatttaatttcatattttcattttggt-ccacaattaataaaaatggtgttttagtcccttacgttttcctcc 54866653  T
Q  659 gtttgccaaataaatc 674  Q
    ||||||||||||||||    
T  54866652 gtttgccaaataaatc 54866637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 792
Target Start/End: Original strand, 1794558 - 1794651
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggatta 792  Q
    |||||||| | |||||||||| | ||||||| |||||||| | |||||| |||| || |||||||   |||||| ||||||||||||||| ||||    
T  1794558 tggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatcaa-ttttttaaaaagatgaccattgaatta 1794651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 567 - 673
Target Start/End: Complemental strand, 52241268 - 52241162
Alignment:
Q  567 attagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgcca 666  Q
    |||| ||| |||| |||||||  |||||| |||||||| ||||  | ||| ||||||||||||   |||||||||  ||||| |||||||  ||||||||    
T  52241268 attacatcgtttgatcccttatttaatttcatgttttcattttgattccacaattaataaaacgtacgttttgattcctcatcttttcctccgtttgcca 52241169  T
Q  667 aataaat 673  Q
    |||||||    
T  52241168 aataaat 52241162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 1794425 - 1794522
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| ||||||||| | |||||| ||||  || || |||||||||||    | |||||||| |||| |||||||| |||||| |||||||||||    
T  1794425 tggtccctcaaataatttcaagttttcattttgatctcacaattaataaaatataccttttgatccctcactttttcctctgtttgtcaaataaatcc 1794522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 565 - 675
Target Start/End: Complemental strand, 50548334 - 50548228
Alignment:
Q  565 ttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgc 664  Q
    |||||||||| ||||||||||||     ||| |||||||| |||| |||||| ||||||||| | |  ||||||  || ||||  ||||||| |||||||    
T  50548334 ttattagatcgtttggtcccttat----tttcatgttttcattttggtcccacaattaataagaataacgttttagtccctcacattttcctctgtttgc 50548239  T
Q  665 caaataaatcc 675  Q
    |||||||||||    
T  50548238 caaataaatcc 50548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 559 - 829
Target Start/End: Original strand, 32254984 - 32255264
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||| |||||||||||||| ||||||||| |  ||||  |||| |||||||||||||||||||   | |||||||| |||| ||||||||      
T  32254984 tttggcttattaaatcatttggtccctcaaataatttcaaatttttattttggtcccataattaataaaacgtacattttgatccctcactttttcctcc 32255083  T
Q  659 gtttgccaaataaatccctagctgttaactttaacc-----------tta---tggaccaatcgtaagagtggttctccatagatcttattaattatttt 744  Q
    |||||||||||||||||| | | ||||| |||||||           |||   |||||||| | |||||||||| | ||||||||| |||||||||||||    
T  32255084 gtttgccaaataaatcccga-cggttaagtttaaccccaaatgatgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattatttt 32255182  T
Q  745 aacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    || || | || |||||   | |||||  ||||||| |||||||||||| ||| |||||||  |||||||||||||||||||||||    
T  32255183 aatttcaaccgtttga---tttttttgtaaaagataaccattggattagacaggtctatttaatcttacgatgtaccaccaacac 32255264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 559 - 693
Target Start/End: Original strand, 3413527 - 3413661
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| ||||||||  ||||||||||  ||||||| |||| |||| | ||||||||||| |||||||||  || ||||  |||| || |    
T  3413527 tttggcttattagatcgtttggtcctctaaataatttcgtgttttcattttggtcctacaattaataaaaatggcgttttagtccctcaccttttactct 3413626  T
Q  659 gtttgccaaataaatccctagctgttaactttaac 693  Q
    |||||||||||||||||||| ||||||| ||||||    
T  3413627 gtttgccaaataaatccctaactgttaagtttaac 3413661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 13564355 - 13564243
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||| ||||||||  ||||||  ||||||| |||| |||||| |||||||||||||||||||||  || ||||  |||||||  |||||    
T  13564355 cttattagatcatttagtcccttatttaatttcttgttttcattttggtcccacaattaataaaactggcgttttagtccctcacattttcctccgtttg 13564256  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  13564255 ccaaataaatccc 13564243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 22538964 - 22538854
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| || ||||||  || ||||| |||||||  |||||    
T  22538964 cttattagatcgtttggtcccttatttaatttcatgttttctttttggtcccacaattaataaaaatgacgttttagtccctcatcttttcctccgtttg 22538865  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  22538864 ccaaataaatc 22538854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 559 - 675
Target Start/End: Complemental strand, 40738960 - 40738843
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaat-aaaactggcgttttgatcgctcattttttccta 657  Q
    |||| ||||||||||| ||||||||| |||| ||||| |||||||  |||| |||||||||||||| ||||| ||||||||  || |||| ||||| ||     
T  40738960 tttggcttattagatcgtttggtcccctaaacaatttcatgtttttattttggtcccataattaataaaaacaggcgttttagtccctcactttttgctc 40738861  T
Q  658 tgtttgccaaataaatcc 675  Q
    ||||||||||||||||||    
T  40738860 tgtttgccaaataaatcc 40738843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 564 - 676
Target Start/End: Original strand, 22335979 - 22336091
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  ||||||  ||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  22335979 cttattagatcttttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctcagtttg 22336078  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  22336079 ccaaataaatccc 22336091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 3414950 - 3414839
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||| | ||| ||||| |||||||||| |||||||| |||| |||||||||||||||||| |||||||||  ||  ||| ||||||||   ||||    
T  3414950 cttattagaacgtttagtcccctaaataatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccttcactttttcctccatttg 3414851  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  3414850 ccaaataaatcc 3414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 709 - 819
Target Start/End: Original strand, 44372885 - 44372994
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| | || || ||||||||| |||| | |||||| ||||||| ||||||||| ||||||| |||    
T  44372885 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatctt-ttttcttaaaagaggaccattagattacacatgtctattttat 44372983  T
Q  809 cttacgatgta 819  Q
    |||| ||||||    
T  44372984 cttaggatgta 44372994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 709 - 819
Target Start/End: Original strand, 44381741 - 44381850
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| | || || ||||||||| |||| | |||||| ||||||| ||||||||| ||||||| |||    
T  44381741 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatctt-ttttcttaaaagaggaccattagattacacatgtctattttat 44381839  T
Q  809 cttacgatgta 819  Q
    |||| ||||||    
T  44381840 cttaggatgta 44381850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 40812729 - 40812601
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||| |||||||  |||||| |||||||| |||| || ||||||||||||||||   ||||||| || ||||| ||||||| ||||||    
T  40812729 cttattagatcgtttgatcccttatttaatttcatgttttcattttggttccataattaataaaacgtacgttttgctccctcatattttcctctgtttg 40812630  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
     |||||| ||||| | ||||| ||||||||    
T  40812629 tcaaatatatcccga-ctgtttactttaac 40812601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 558 - 693
Target Start/End: Original strand, 11501174 - 11501308
Alignment:
Q  558 ctttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttccta 657  Q
    ||||| ||||||||||| |||||||| |||| |||||| |||||||| |||| |||||| | ||||||||| | || ||||  || ||||  |||||||     
T  11501174 ctttgacttattagatcgtttggtcctttaattaatttcatgttttcattttggtcccacagttaataaaaatagcattttagtccctcaccttttcctc 11501273  T
Q  658 tgtttgccaaataaatccctagctgttaactttaac 693  Q
      ||||||||||||||||| | ||||||||||||||    
T  11501274 catttgccaaataaatcccga-ctgttaactttaac 11501308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 578 - 674
Target Start/End: Complemental strand, 47456477 - 47456381
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    |||||||| ||||||||| | |||||| |||| |||||| ||||||||||||   | ||||| || ||||||||||| | |||||||||||||||||    
T  47456477 tggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtactttttggtccctcattttttcttctgtttgccaaataaatc 47456381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 22537729 - 22537832
Alignment:
Q  722 ccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacc 821  Q
    ||||||||| ||||||||||||||| |||| || ||||||    |||||| |||||   ||||||||||||  || ||||||| |||||||||||| |||    
T  22537729 ccatagatcctattaattattttaatttaaaccgtttgat----tttttttaaaagggaaccattggattatgcaggtctattttatcttacgatgaacc 22537824  T
Q  822 accaacac 829  Q
    ||||||||    
T  22537825 accaacac 22537832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 33096883 - 33096980
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| ||||||||| | ||| || |||||| |||| |||||||||||||  | ||||| || |||| ||||||||  |||||||||||||||||    
T  33096883 tggtccctcaaataatttcaagttctcattttaggcccacaattaataaaacttaccttttggtccctcactttttcctccgtttgccaaataaatcc 33096980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 22537559 - 22537688
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||| |||||||  |||||| || ||||| |||| |||||| ||||| ||||| || | |||||||| ||||  |||  || ||||||    
T  22537559 cttattagatcgtttgctcccttatttaattttatattttcattttggtcccacaattactaaaaatgacattttgatccctcacgtttgtctctgtttg 22537658  T
Q  664 ccaaataaatccctagctgttaactttaacct 695  Q
    ||||||||||||  | ||||||| ||||||||    
T  22537659 ccaaataaatcc--aactgttaattttaacct 22537688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 722 - 814
Target Start/End: Original strand, 48312209 - 48312300
Alignment:
Q  722 ccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacg 814  Q
    ||||||||| |||||||| |||||| ||||    ||||||||| |||||| ||| ||||||||||||||||| || ||||||| |||||||||    
T  48312209 ccatagatcctattaatt-ttttaatttaaatggtttgatctttttttttaaaaggatgaccattggattacgcaggtctattttatcttacg 48312300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 580 - 674
Target Start/End: Original strand, 43459471 - 43459565
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    ||||| |||||||||| | |||||| |||| |||||| ||||||||||||  ||||||   || ||||| |||||||  ||||||||||||||||    
T  43459471 gtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtgcgtttaagtccctcatgttttcctccgtttgccaaataaatc 43459565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 675
Target Start/End: Complemental strand, 6173552 - 6173455
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| ||||||||| | |||||| ||||   |||||||||||||||||   | ||||| || |||| ||||||||  |||||||||||||||||    
T  6173552 tggtccctcaaataatttcaagttttcattttgtacccataattaataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatcc 6173455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 13562822 - 13562950
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||| ||||||||  ||||||  ||||||  |||| |||||| || |||||||| |||||||||  || ||||  |||| || |||||     
T  13562822 cttattagatcgtttagtcccttatttaatttcttgtttttattttggtcccacaagtaataaaaatggcgttttagtccctcacatttttctctgttta 13562921  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||| |  |||||||||||||    
T  13562922 ccaaataaatcccga-ttgttaactttaac 13562950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 763
Target Start/End: Original strand, 35295844 - 35295909
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatct 763  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| |||| || ||||||||    
T  35295844 tggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatct 35295909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 45454052 - 45454149
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||| ||| |||||| | |||||| |||| ||| |||||||||||||||   ||||||  || |||| ||||||||  |||||||||||||||||    
T  45454052 tggtcccctaattaatttcacgttttcattttggtctcataattaataaaacatacgttttagtccctcactttttcctccgtttgccaaataaatcc 45454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 47059122 - 47059219
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||| ||| |||||| | |||||| |||| |||| | |||||||||||    |||||||||| |||| ||||||||  |||||||||||||||||    
T  47059122 tggtcccctaattaattttaagttttcattttggtcctacaattaataaaatgtacgttttgatccctcactttttcctccgtttgccaaataaatcc 47059219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 11502538 - 11502426
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||||||| |||| |||||| |||||||| ||||  ||||| | ||||||||| | |||  ||  || ||||  |||| || ||||||    
T  11502538 cttattagatcgtttggtcctttaactaatttcatgttttcattttgatcccacatttaataaaaattgcgaattagtccctcaacttttgctctgtttg 11502439  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  11502438 ccaaataaatccc 11502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 676
Target Start/End: Original strand, 30310137 - 30310233
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc 676  Q
    |||||||||||||||| | |||||| |||| |||||| ||||||||||||   | |||   |  |||||||||||||  ||||||||||||||||||    
T  30310137 gtcccttaaataatttcaagttttcatttttgtcccacaattaataaaacgtacatttgagttcctcattttttcctccgtttgccaaataaatccc 30310233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 578 - 674
Target Start/End: Complemental strand, 45455474 - 45455378
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    ||||||||||| |||||| |  ||||| |||| |||||| ||||||||||||   | |||||||| |||| ||||| ||  ||||||||||||||||    
T  45455474 tggtcccttaattaatttcaaattttcattttggtcccacaattaataaaacgtacattttgatccctcacttttttctccgtttgccaaataaatc 45455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 628
Target Start/End: Original strand, 24281075 - 24281138
Alignment:
Q  565 ttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaa 628  Q
    ||||||||||||||| |||  |||||||||| |||||||  |||| |||||| |||||||||||    
T  24281075 ttattagatcatttgatcctctaaataatttcatgtttttattttggtcccacaattaataaaa 24281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 673
Target Start/End: Complemental strand, 32256497 - 32256402
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaat 673  Q
    |||||||| ||||||||| | |||||| |||| ||||||||||||||||||    | ||||| || |||| ||||||||   ||||||||||||||    
T  32256497 tggtccctcaaataatttcaagttttcattttggtcccataattaataaaatgtaccttttggtccctcactttttcctccatttgccaaataaat 32256402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 764
Target Start/End: Complemental strand, 43460782 - 43460727
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatctt 764  Q
    |||||||||| | ||||||||| ||||||||||||||| |||| || |||||||||    
T  43460782 taagagtggtccaccatagatcctattaattattttaatttaaaccctttgatctt 43460727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 588 - 674
Target Start/End: Complemental strand, 4300140 - 4300054
Alignment:
Q  588 aataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    |||||||| | |||||| |||| |||||| ||||||||||||   |||||   || |||| |||||||| |||||||||||||||||    
T  4300140 aataatttcaagttttcattttggtcccacaattaataaaacgtacgtttaagtccctcactttttcctctgtttgccaaataaatc 4300054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 700 - 829
Target Start/End: Complemental strand, 11502389 - 11502263
Alignment:
Q  700 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagt 799  Q
    |||||| | |||||||||| | ||||||||| || |||||||||||| || |||| |||||  || | |||| ||||||  ||||||||||||  || ||    
T  11502389 gaccaaccttaagagtggtccaccatagatcctagtaattattttaatttcagccgtttga--ttttcttttaaaaagagaaccattggattaggcaggt 11502292  T
Q  800 ctattatatcttacgatgtaccaccaacac 829  Q
     |||| |||||||| |||||| ||||||||    
T  11502291 ttattttatcttac-atgtacgaccaacac 11502263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 32602933 - 32603043
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| ||||  ||||||| | ||||||||| | |||||  |||| |||||||||||||||||||   ||||||  || |||| ||||| ||  |||||    
T  32602933 cttatttgatccattggtccttcaaataatttcaagtttttattttggtcccataattaataaaacgtacgttttagtccctcactttttactccgtttg 32603032  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  32603033 ccaaataaatc 32603043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 578 - 692
Target Start/End: Original strand, 40508392 - 40508506
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    ||||||| |||||||||| | |||||| |||| |||||| ||||||||||||   |||||   || |||| ||||||||  ||| ||||||||||||| |    
T  40508392 tggtcccctaaataatttcaagttttcatttttgtcccacaattaataaaacgtacgtttaagtccctcactttttcctccgttagccaaataaatcctt 40508491  T
Q  678 agctgttaactttaa 692  Q
     | |||||| |||||    
T  40508492 cggtgttaagtttaa 40508506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 722 - 813
Target Start/End: Original strand, 16756040 - 16756128
Alignment:
Q  722 ccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttac 813  Q
    ||||||||| ||||||||||||||| || | ||||||||   | |||||| ||| || ||||||| |||||| ||||| |||| ||||||||    
T  16756040 ccatagatcctattaattattttaattttaaccatttga---ttttttttaaaaggaggaccattagattacgcaagtgtattttatcttac 16756128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 577 - 674
Target Start/End: Original strand, 30333298 - 30333395
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    |||||||| |||||||||| | |||||| |||| |||||| ||||||||||||     ||||| || |||||||||| ||  ||||| ||||||||||    
T  30333298 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtatcttttggtccctcatttttttctccgtttgtcaaataaatc 30333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 564 - 629
Target Start/End: Complemental strand, 30334753 - 30334688
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaac 629  Q
    |||| ||||||  |||||||| ||| |||||| | |||||| ||||||||||| ||||||||||||    
T  30334753 cttaatagatccattggtcccctaactaatttcaagttttcattttagtcccacaattaataaaac 30334688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 784 - 829
Target Start/End: Original strand, 46835906 - 46835951
Alignment:
Q  784 attggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    |||| |||| ||||||||||| |||| |||||||||||||||||||    
T  46835906 attgtattagacaagtctattttatcatacgatgtaccaccaacac 46835951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 812
Target Start/End: Complemental strand, 47060383 - 47060334
Alignment:
Q  763 ttgttttttcaaaagatgaccattggattacacaagtctattatatctta 812  Q
    ||||||||| ||| ||||||||||| ||||||||||| |||| |||||||    
T  47060383 ttgttttttaaaaggatgaccattgaattacacaagtgtattttatctta 47060334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 13117749 - 13117637
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||||||||||||||| |||||||||  || ||||  ||||||| ||||||    
T  13117749 cttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctctgtttg 13117650  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  13117649 ccaaataaatccc 13117637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 42100222 - 42100094
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||| |||||||  |||||| |||||||| |||| ||| || ||||||||||| ||||||||||||| ||||| |||||||  |||||    
T  42100222 cttattagatcgtttgatcccttatttaatttcatgttttcattttggtctcacaattaataaaaatggcgttttgatccctcatattttcctccgtttg 42100123  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    |||||||| |||| | ||||||||||||||    
T  42100122 ccaaataattcccga-ctgttaactttaac 42100094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 701 - 829
Target Start/End: Complemental strand, 32695241 - 32695116
Alignment:
Q  701 accaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtc 800  Q
    ||||||| ||||| |||| | ||||||||| ||||||||||||||| |||| || |||||| || ||||   ||||||  |||||||||||| |||||||    
T  32695241 accaatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgattttttttt---aaaagagaaccattggattagacaagtc 32695145  T
Q  801 tattatatcttacgatgtaccaccaacac 829  Q
    |||| ||||||||||| ||||||||||||    
T  32695144 tattttatcttacgatataccaccaacac 32695116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 13116330 - 13116458
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  ||  |||  |||||||  |||||    
T  13116330 cttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttagtccttcacattttcctccgtttg 13116429  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||| | ||||||||||||||    
T  13116430 ccaaataaatcccga-ctgttaactttaac 13116458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 700 - 829
Target Start/End: Original strand, 17455194 - 17455321
Alignment:
Q  700 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagt 799  Q
    |||||||| ||| |||||| | ||||||||||||||||||||||||| || | || ||| ||||  |||||  |||||| ||||||| |||||| || ||    
T  17455194 gaccaatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttttatctatttttt--aaaagaggaccattagattacgcaggt 17455291  T
Q  800 ctattatatcttacgatgtaccaccaacac 829  Q
    ||||| |||||||||||||||||| |||||    
T  17455292 ctattttatcttacgatgtaccactaacac 17455321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 677
Target Start/End: Original strand, 211595 - 211708
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| |||||| |||||||||||| | ||||||  || || | ||||| ||  ||||     
T  211595 cttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttta 211694  T
Q  664 ccaaataaatccct 677  Q
    ||||||||||||||    
T  211695 ccaaataaatccct 211708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 677
Target Start/End: Complemental strand, 240661 - 240548
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| |||||| |||||||||||| | ||||||  || || | ||||| ||  ||||     
T  240661 cttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttta 240562  T
Q  664 ccaaataaatccct 677  Q
    ||||||||||||||    
T  240561 ccaaataaatccct 240548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 677
Target Start/End: Original strand, 725218 - 725331
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| |||||| |||||||||||| | ||||||  || || | ||||| ||  ||||     
T  725218 cttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttta 725317  T
Q  664 ccaaataaatccct 677  Q
    ||||||||||||||    
T  725318 ccaaataaatccct 725331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 677
Target Start/End: Complemental strand, 794016 - 793903
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| |||||| |||||||||||| | ||||||  || || | ||||| ||  ||||     
T  794016 cttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttta 793917  T
Q  664 ccaaataaatccct 677  Q
    ||||||||||||||    
T  793916 ccaaataaatccct 793903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 28418806 - 28418935
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||| ||||||||  |||||    
T  28418806 cttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctccgtttg 28418905  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | | ||||||||||||||    
T  28418906 ccaaataaatctcaaactgttaactttaac 28418935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 28420290 - 28420161
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||||||||||||  |||||    
T  28420290 cttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccgtttg 28420191  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
     |||||||||| | | ||||||||||||||    
T  28420190 tcaaataaatctcaaactgttaactttaac 28420161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 564 - 675
Target Start/End: Original strand, 42098563 - 42098674
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| ||||||||||||| | ||  |||  ||  |||||    
T  42098563 cttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttgatcccccacgtttgtctccgtttg 42098662  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  42098663 ccaaataaatcc 42098674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 709 - 819
Target Start/End: Complemental strand, 20180634 - 20180525
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| | || || ||||||||| |||| | |||||| ||||||| ||||||||| ||||||| |||    
T  20180634 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatctt-ttttcttaaaagaggaccattagattacacatgtctattttat 20180536  T
Q  809 cttacgatgta 819  Q
    |||| ||||||    
T  20180535 cttaggatgta 20180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 17338041 - 17338151
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||| ||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||| ||  |||||    
T  17338041 cttattaaatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacatttttctccgtttg 17338140  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  17338141 ccaaataaatc 17338151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 17339665 - 17339554
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| || ||||| |||| |||| | ||||||||||| |||| ||||  || ||||  |||||||  |||||    
T  17339665 cttattagatcgtttggtcccttatttaatttcatattttcattttggtccaacaattaataaaaatggcattttagtccctcacgttttcctccgtttg 17339566  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  17339565 ccaaataaatcc 17339554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 698 - 829
Target Start/End: Complemental strand, 24192634 - 24192504
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| | || || |||||| || |||| | ||||||  |||||| |||||| ||     
T  24192634 tggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat-tttttttcttaaaagagaaccattagattacgcat 24192536  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| ||| ||| |||||| |||||||||    
T  24192535 gtctattttattttaggatgtatcaccaacac 24192504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 813
Target Start/End: Original strand, 6397942 - 6398041
Alignment:
Q  713 agtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatctta 812  Q
    |||||| | ||||||| |||||||||| |||||| |||| |||||||||| |||||||  ||| ||||| |||| |||||||||| | |||| |||||||    
T  6397942 agtggtccaccatagaccttattaatttttttaatttaaaccatttgatc-tgtttttaaaaaggatgatcatttgattacacaaatgtattttatctta 6398040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 559 - 629
Target Start/End: Original strand, 32797133 - 32797203
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaac 629  Q
    |||| |||||| ||||  ||||||||||||||||||| | |||||| |||| |||||| ||||||||||||    
T  32797133 tttggcttatttgatctattggtcccttaaataatttcaagttttcattttggtcccacaattaataaaac 32797203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 630
Target Start/End: Original strand, 45394972 - 45395033
Alignment:
Q  569 tagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    ||||||||||| |||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  45394972 tagatcatttgatcccttaattaattttaagttttcattttgatcccataattaataaaact 45395033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 586 - 674
Target Start/End: Original strand, 6397805 - 6397893
Alignment:
Q  586 taaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    |||||||||| || ||||| |||| |||||| |||||||||||||  | ||||  || |||||||||| ||  ||||||||||||||||    
T  6397805 taaataatttcatattttcattttggtcccacaattaataaaacttacattttagtccctcatttttttctccgtttgccaaataaatc 6397893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 677
Target Start/End: Original strand, 8570132 - 8570231
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    ||||||| ||| |||||| | |||||| |||| |||| | ||||||||||||   ||||||| || |||| ||||  || ||||||||||||||||||||    
T  8570132 tggtcccctaattaatttcacgttttcattttggtcctacaattaataaaacgtacgttttggtccctcacttttgtctctgtttgccaaataaatccct 8570231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 764
Target Start/End: Complemental strand, 32798491 - 32798436
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatctt 764  Q
    |||||||||| | ||||||||| ||||||||||||||| |||| || |||||||||    
T  32798491 taagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatctt 32798436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 813
Target Start/End: Original strand, 42870960 - 42871074
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||||| |||||||||| | || |||| |||||||| | || ||| |||| || |||||||| || |||| ||| ||||||||||| ||||| ||     
T  42870960 tggaccaatcttaagagtggtccaccgtagaccttattaaattttgtaatttaaaccgtttgatct-gtgttttaaaaggatgaccattgaattacgcat 42871058  T
Q  798 gtctattatatcttac 813  Q
    || |||| ||||||||    
T  42871059 gtgtattttatcttac 42871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 600 - 674
Target Start/End: Complemental strand, 6398577 - 6398503
Alignment:
Q  600 ttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    ||||| |||| ||| |||||||||||||||  |||||||  || |||||||||||||  ||||| ||||||||||    
T  6398577 ttttcattttggtctcataattaataaaacaagcgttttagtccctcattttttcctccgtttgtcaaataaatc 6398503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 41743731 - 41743665
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| ||||||||||| |||| |||||| | |||||| |||| ||||||||| ||||||||||    
T  41743731 cttaataggtcatttggtcctttaattaattttaagttttcattttggtcccataagtaataaaact 41743665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 26696546 - 26696643
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||| ||| |||||| | |||||| |||| |||||| ||||||||||||   | ||||| || |||| ||||||||   ||||||||||||||||    
T  26696546 tggtcccctaattaatttcaagttttcattttggtcccacaattaataaaacatacattttggtccctcactttttcctccatttgccaaataaatcc 26696643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 578 - 675
Target Start/End: Complemental strand, 42872291 - 42872194
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||||||||||||| | |||||| ||||| || |||||| ||||||||   ||||||  ||  ||| ||||||||  ||||| |||||||||||    
T  42872291 tggtcccttaaataattttaagttttcattttaatctcataatgaataaaacgtacgttttagtccttcactttttcctccgtttgtcaaataaatcc 42872194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 564 - 829
Target Start/End: Complemental strand, 18346866 - 18346592
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  |||||| || ||||| |||| |||||| ||||||||||| ||||||||||||| ||||  |||  || ||||||    
T  18346866 cttattagatcatttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggcgttttgatccctcacgtttgtctctgtttg 18346767  T
Q  664 ccaaataaatccctagctgttaactttaacctta--------------tggaccaatcgtaagagtggttctccatagatcttattaattattttaactt 749  Q
    ||||||||||||    ||||||| |||||||| |              || ||||| | |||||||||| | | ||| ||| ||||||||||||||| ||    
T  18346766 ccaaataaatcc--gactgttaattttaacctcaaatgatgtttacggtgaaccaaccttaagagtggtccactataaatcctattaattattttaattt 18346669  T
Q  750 aagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    || || |||||   | |||||| |||||   ||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  18346668 aaaccgtttga---tttttttttaaaagtaaaccattggattatgcaagtctattttatcttacgatgtaccaccaacac 18346592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 23397470 - 23397358
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  23397470 cttattagatcatttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgtttg 23397371  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  23397370 ccaaataaatccc 23397358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 232176 - 232303
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||| ||||||||  |||||    
T  232176 cttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaac--acgttttagtccctcactttttcctccgtttg 232273  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||| | ||||||||||||||    
T  232274 ccaaataaatcccaaactgttaactttaac 232303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 813
Target Start/End: Original strand, 23392214 - 23392475
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||| |||||| ||||||||||| ||||||||   || ||||  |||||||  |||||    
T  23392214 cttattagatcatttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgtttaagtccctcaccttttcctccgtttg 23392313  T
Q  664 ccaaataaatccctagctgttaactttaacctta-------------tggaccaatcgtaagagtggttctccatagatcttattaattattttaactta 750  Q
    |||||||||| ||||  |||||| |||||||  |             |||| ||| | ||| |||||| | ||||||||| ||||||||||||||| ||     
T  23392314 ccaaataaat-cctaaatgttaagtttaaccccaaatgatgctaaggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaatttc 23392412  T
Q  751 agccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttac 813  Q
    | || |||||| || |||||| ||||||| |||||| |||||  |||||||||| ||||||||    
T  23392413 aaccgtttgatattttttttttaaaagataaccattagattatgcaagtctattttatcttac 23392475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 5186568 - 5186696
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||| |||||||  |||||| |||||||| |||| ||| || ||||||||||| || |||||| |||  |||| |||||||  |||||    
T  5186568 cttattagatcatttgatcccttatttaatttcatgttttcattttggtcacacaattaataaaagtgacgttttaatccatcatcttttcctccgtttg 5186667  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||| | | ||||||||||||    
T  5186668 ccaaataaatcccga-ccgttaactttaac 5186696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 17839255 - 17839143
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  ||||||  ||||||| |||| |||||| ||||||||||| |||||||||  || ||||  |||||||  |||||    
T  17839255 cttattagatcgtttggtcccttatttaatttcttgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgtttg 17839156  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  17839155 ccaaataaatccc 17839143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 2688040 - 2687929
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| ||||||||||| ||||||||||| |||||||||  || ||||  ||||  |  |||||    
T  2688040 cttattagatcgtttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaaatggcgttttagtccctcacctttttatccgtttg 2687941  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  2687940 ccaaataaatcc 2687929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 6702986 - 6702876
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| || ||||| |||| |||||| ||||||||||| ||||||||| ||| ||||  |||||||  |||||    
T  6702986 cttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggcgtttt-atccctcacgttttcctccgtttg 6702888  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  6702887 ccaaataaatcc 6702876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 565 - 638
Target Start/End: Original strand, 29722664 - 29722737
Alignment:
Q  565 ttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgtttt 638  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||  ||||||||||||||||| |||||||||    
T  29722664 ttattagatcatttggtcccttatttaatttcatgttttcattttgatcccataattaataaaaatggcgtttt 29722737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 559 - 675
Target Start/End: Original strand, 17837611 - 17837727
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| ||||||||||||  ||||||| ||||||| |||| || ||| ||||||||||| |||||||||  || ||||| ||||| |      
T  17837611 tttggcttattagatcgtttggtcccttatttaatttattgttttcattttggttccacaattaataaaaatggcgttttagtccctcatcttttcttcc 17837710  T
Q  659 gtttgccaaataaatcc 675  Q
    |||| ||||||||||||    
T  17837711 gtttaccaaataaatcc 17837727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 564 - 676
Target Start/End: Original strand, 29380191 - 29380303
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||| |||||| |||||| |||| |||||||||  || ||||  ||||| |  |||||    
T  29380191 cttattagatcatttggtcccttatttaatttcttgttttcattttggtcccacaattaacaaaaatggcgttttagtccctcaccttttcttccgtttg 29380290  T
Q  664 ccaaataaatccc 676  Q
    |||||||||||||    
T  29380291 ccaaataaatccc 29380303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 709 - 828
Target Start/End: Complemental strand, 29381689 - 29381572
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||| | | ||||||||| ||||||||||||||| || | || |||||| ||  ||||  ||||||| ||||||||||||  || ||||||| |||    
T  29381689 taagagtgatccaccatagatcctattaattattttaatttcaaccgtttgatttt--ttttcaaaaagataaccattggattaggcaggtctattttat 29381592  T
Q  809 cttacgatgtaccaccaaca 828  Q
    ||||||||||||||||||||    
T  29381591 cttacgatgtaccaccaaca 29381572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 6452627 - 6452516
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| ||||  |||||||| |||||||||| | |||||| |||| |||||||||||||||||||   |||||   || |||||||||||||  |||||    
T  6452627 cttatttgatccattggtcccctaaataatttcaagttttcattttggtcccataattaataaaacgtacgtttgagtccctcattttttcctccgtttg 6452528  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  6452527 ccaaataaatcc 6452516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 638
Target Start/End: Complemental strand, 5187738 - 5187664
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgtttt 638  Q
    ||||||||||  ||||||||||||  |||||| |||||||| |||| |||||||||||||||||| |||||||||    
T  5187738 cttattagattgtttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgtttt 5187664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 709 - 828
Target Start/End: Original strand, 17837773 - 17837890
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| || | || |||||| ||  | ||  ||| ||| ||||||||||||  || ||||||| |||    
T  17837773 taagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt--tcttaaaaacgataaccattggattaggcaggtctattttat 17837870  T
Q  809 cttacgatgtaccaccaaca 828  Q
    ||||||||||||||||||||    
T  17837871 cttacgatgtaccaccaaca 17837890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 559 - 674
Target Start/End: Original strand, 6701375 - 6701490
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||||| ||||||||||||  |||||| || ||||| |||| |||||| ||||||||||| |||  ||||  || ||||  |||||||      
T  6701375 tttggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggtattttagtccctcacattttcctcc 6701474  T
Q  659 gtttgccaaataaatc 674  Q
    ||||||||||||||||    
T  6701475 gtttgccaaataaatc 6701490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 18245652 - 18245762
Alignment:
Q  156 tttggaaagtgaagttggtgattagtccagaacagttgatggaaattttggcacaagaggctagaacaaaagagttgatagagagtgtaaggattgtagc 255  Q
    ||||||||||||| |||   || | ||| ||| ||||| |||| |||||| ||||||||| |  ||| || ||||||||||||||||| |||||||||||    
T  18245652 tttggaaagtgaaattgtgtataactcctgaaaagttgttggagattttgtcacaagaggtttcaaccaaggagttgatagagagtgtgaggattgtagc 18245751  T
Q  256 aaaatgtggtg 266  Q
     ||||||||||    
T  18245752 caaatgtggtg 18245762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 576 - 677
Target Start/End: Original strand, 2687242 - 2687343
Alignment:
Q  576 tttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||||||||  |||||| |||||||| ||||  ||||| ||||||||||| |||||||||  ||  |||  |||||||  |||||||||||||||||    
T  2687242 tttggtcccttatttaatttcatgttttcattttgatcccacaattaataaaaatggcgttttagtccttcacattttcctccgtttgccaaataaatcc 2687341  T
Q  676 ct 677  Q
    ||    
T  2687342 ct 2687343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 675
Target Start/End: Original strand, 6452299 - 6452395
Alignment:
Q  579 ggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||| |||||||||| | ||||||||||| |||| |||||||||||||    ||||||  || |||| ||||||||  |||||||||||||||||    
T  6452299 ggtcccctaaataatttcaagttttcgttttggtcctataattaataaaaggtacgttttagtccctcactttttcctccgtttgccaaataaatcc 6452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 638
Target Start/End: Complemental strand, 12256700 - 12256626
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgtttt 638  Q
    ||||||||||  ||||||||||||  |||||| ||||||||||||| ||| || ||||||||||| | |||||||    
T  12256700 cttattagattgtttggtcccttatttaatttcatgttttcgttttggtcgcacaattaataaaaatagcgtttt 12256626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 233680 - 233556
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||| ||||||| ||||||||||| |  ||||| |||| ||||||||||||||||||    ||||||  || |||||||||||     ||||    
T  233680 cttaatagatcaattggtcctttaaataatttcaatttttcattttggtcccataattaataaaaaacacgttttagtccctcattttttc-----tttg 233586  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | |  |||||||||||||    
T  233585 ccaaataaatctcaaattgttaactttaac 233556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 29381846 - 29381735
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  ||||||  | ||||| ||||  ||||| ||||||||||| || ||||||  ||  |||| |||||||  ||||     
T  29381846 cttattagatcgtttggtcccttatttaatttcttattttcattttgatcccacaattaataaaaatgacgttttagtccttcatcttttcctccgttta 29381747  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  29381746 ccaaataaatcc 29381735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 579 - 629
Target Start/End: Original strand, 7310291 - 7310341
Alignment:
Q  579 ggtcccttaaataatttaatgttttcgttttagtcccataattaataaaac 629  Q
    ||||| ||||||||||| | |||||| |||| |||||||||||||||||||    
T  7310291 ggtcctttaaataattttaagttttcattttggtcccataattaataaaac 7310341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 694
Target Start/End: Complemental strand, 32507142 - 32507012
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||  ||||||| ||||  |||||| |||||||| ||||  ||||| | ||||||||| ||| |||||  || ||||  |||| ||  |||||    
T  32507142 cttattagattgtttggtcacttatttaatttcatgttttcattttgatcccacatttaataaaaatggtgttttagtccctcacatttttctcagtttg 32507043  T
Q  664 ccaaataaatccctagctgttaactttaacc 694  Q
    |||||||||||| |  ||||||| |||||||    
T  32507042 ccaaataaatccttgactgttaagtttaacc 32507012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 698 - 829
Target Start/End: Original strand, 35371053 - 35371183
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| || | |  |||||| || |||||| ||||||  ||||||||||||  |||    
T  35371053 tggaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactttttgatttt-ttttttaaaaagagaaccattggattaggcaa 35371151  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| ||||||||||||||||||||||||    
T  35371152 gtctattttatcttacgatgtaccaccaacac 35371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 50810950 - 50810821
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||||||||||||  |||||    
T  50810950 cttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccgtttg 50810851  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | | ||||||||||||||    
T  50810850 ccaaataaatctcaaactgttaactttaac 50810821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 50864914 - 50865043
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||||||||||||  |||||    
T  50864914 cttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccgtttg 50865013  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | | ||||||||||||||    
T  50865014 ccaaataaatctcaaactgttaactttaac 50865043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 586 - 793
Target Start/End: Original strand, 42684898 - 42685115
Alignment:
Q  586 taaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgtta 685  Q
    |||||||||| | |||||| |||| || ||||||| |||||||||| ||||||  || |||||||||| |||||||| |||||||||||| |  ||||||    
T  42684898 taaataattttaagttttcattttggttccataatgaataaaactgacgttttagtccctcatttttttctatgtttaccaaataaatccttgactgtta 42684997  T
Q  686 actttaacc--------ttatgg---accaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaa 774  Q
    | |||||||         |||||   ||||| | |||||||||| | ||||| | |||||||| | |||||| |||| || ||||||| |||||||| ||    
T  42684998 agtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttgatc-tgttttttaaa 42685096  T
Q  775 aagatgaccattggattac 793  Q
    ||||||||||||| |||||    
T  42685097 aagatgaccattgaattac 42685115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 564 - 675
Target Start/End: Complemental strand, 53614389 - 53614278
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  ||||||  ||||||  |||| |||||| |||||||||||||||||||||  || ||||  ||||||| | ||||    
T  53614389 cttattagatcgtttggtcccttatttaatttcttgtttttattttggtcccacaattaataaaactggcgttttagtccctcacattttcctctatttg 53614290  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  53614289 ccaaataaatcc 53614278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 559 - 693
Target Start/End: Original strand, 53612866 - 53612999
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctat 658  Q
    |||| ||||||||| | |||  |||||||  ||||||  ||||||| |||| |||||||||||||||||| |||||||||  || ||||  ||||||| |    
T  53612866 tttggcttattagaacgtttaatcccttatttaatttcttgttttcattttggtcccataattaataaaaatggcgttttattccctcacattttcctct 53612965  T
Q  659 gtttgccaaataaatccctagctgttaactttaac 693  Q
    |||||||||||||||||| | | ||||||||||||    
T  53612966 gtttgccaaataaatcccga-ccgttaactttaac 53612999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 564 - 673
Target Start/End: Complemental strand, 10732245 - 10732136
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| |||| |||||||  ||||||| ||||||| |||| |||||||||||||||||| |||||||||  || ||||  |||||||  ||||     
T  10732245 cttattagatcgtttgatcccttatttaatttattgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctccgttta 10732146  T
Q  664 ccaaataaat 673  Q
    ||||||||||    
T  10732145 ccaaataaat 10732136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 709 - 829
Target Start/End: Original strand, 26886429 - 26886547
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||| ||| ||||||||||||||| |||| || |||||| || |||||  |||||   ||||||||||||  || ||||||| |||    
T  26886429 taagagtggtccaccataaatcctattaattattttaatttaaaccgtttgatttttttttt--aaaagggaaccattggattatgcatgtctattttat 26886526  T
Q  809 cttacgatgtaccaccaacac 829  Q
    |||||||||||||||||||||    
T  26886527 cttacgatgtaccaccaacac 26886547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 564 - 673
Target Start/End: Complemental strand, 26887671 - 26887562
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| |||||||| |||| |||||| ||||||||||| ||||  |||  || ||||| ||||||| |||||     
T  26887671 cttattagatcgtttggtcccttatttaatttcatgttttcatttttgtcccacaattaataaaaatggcaatttagtccctcatcttttcctctgtttc 26887572  T
Q  664 ccaaataaat 673  Q
    ||||||||||    
T  26887571 ccaaataaat 26887562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 50809421 - 50809550
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||| ||||||||  |||||    
T  50809421 cttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctccgtttg 50809520  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | | |||| |||||||||    
T  50809521 ccaaataaatctcaaactgtcaactttaac 50809550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 50866441 - 50866312
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||||||  ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||   ||||||  || |||| ||||||||  |||||    
T  50866441 cttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctccgtttg 50866342  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||| | | |||| |||||||||    
T  50866341 ccaaataaatctcaaactgtcaactttaac 50866312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 565 - 675
Target Start/End: Original strand, 27837921 - 27838031
Alignment:
Q  565 ttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgc 664  Q
    |||||||||| |||| |||||||  |||||| |||||||| |||| |||||| ||||||||||  |||||||||  || ||||  |||||||  ||||||    
T  27837921 ttattagatcgtttgatcccttatttaatttcatgttttcattttggtcccacaattaataaatatggcgttttagtccctcaccttttcctccgtttgc 27838020  T
Q  665 caaataaatcc 675  Q
    |||||||||||    
T  27838021 caaataaatcc 27838031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 41264769 - 41264659
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||  ||||||||||||  |||||| |||||||| |||| ||| || | ||||||||| ||||||||||||| ||||  |||| ||  |||||    
T  41264769 cttattagattgtttggtcccttatttaatttcatgttttcattttggtctcacatttaataaaaatggcgttttgatccctcacctttttctccgtttg 41264670  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  41264669 ccaaataaatc 41264659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 10730885 - 10731013
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| |||| |||| |||||||   |||||  ||||||| |||| |||||||||||||||||| |||| ||||| ||  ||| ||||| ||  |||||    
T  10730885 cttattggatcgtttgatcccttattcaatttcttgttttcattttggtcccataattaataaaaatggcattttggtccttcacttttttctccgtttg 10730984  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
    ||||||||||||| | ||||||||||||||    
T  10730985 ccaaataaatcccga-ctgttaactttaac 10731013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 709 - 829
Target Start/End: Complemental strand, 41264612 - 41264494
Alignment:
Q  709 taagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 808  Q
    |||||||||| | ||||||||| ||||||||||||||| ||   || |||||  || |||||| ||||||  ||||||| ||||  || ||||||| |||    
T  41264612 taagagtggtacaccatagatcctattaattattttaatttcgaccgtttga--tttttttttaaaaagagaaccattgaattaagcaggtctattttat 41264515  T
Q  809 cttacgatgtaccaccaacac 829  Q
    |||||||||||||||||||||    
T  41264514 cttacgatgtaccaccaacac 41264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 693
Target Start/End: Complemental strand, 53194962 - 53194857
Alignment:
Q  588 aataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaac 687  Q
    |||||||| | |||||| |||| |||||||||||||||||||   ||||||| || |||| |||||||| | |||||||||||||||| |  |||||||     
T  53194962 aataatttcaagttttcattttggtcccataattaataaaacgtacgttttggtccctcactttttcctctatttgccaaataaatccatgtctgttaag 53194863  T
Q  688 tttaac 693  Q
    ||||||    
T  53194862 tttaac 53194857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 580 - 695
Target Start/End: Complemental strand, 18458757 - 18458642
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctag 679  Q
    ||||| |||||||||| | |||||  |||| |||||| ||||||||||||| |||||||  || |||| ||||||||  |||||||||||||||| || |    
T  18458757 gtcccctaaataatttcaagtttttattttggtcccacaattaataaaacttgcgttttagtccctcactttttcctccgtttgccaaataaatctctgg 18458658  T
Q  680 ctgttaactttaacct 695  Q
     | |||| ||||||||    
T  18458657 tttttaagtttaacct 18458642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 590 - 689
Target Start/End: Complemental strand, 35372248 - 35372150
Alignment:
Q  590 taatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactt 689  Q
    |||||| |||||||| |||| ||| || ||||||||||| |||||||||  || ||||  ||||||| |||||||||||||||||| || ||||||||||    
T  35372248 taatttcatgttttcattttggtctcacaattaataaaaatggcgttttagtccctcaccttttcctctgtttgccaaataaatcctta-ctgttaactt 35372150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 558 - 628
Target Start/End: Complemental strand, 3817385 - 3817315
Alignment:
Q  558 ctttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaa 628  Q
    ||||| ||||||||||| ||||||||| ||| |||||| |||||||| |||| |||||||| |||||||||    
T  3817385 ctttggcttattagatcgtttggtcccctaactaatttcatgttttcattttggtcccatatttaataaaa 3817315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 42686261 - 42686151
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||||||||||||| ||||||||||||||  |||||||  ||||  ||| | |||||||||||| ||| ||||  || |||| ||||| || ||||||    
T  42686261 cttattagatcatttgatcccttaaataattctatgtttttattttgatcctacaattaataaaacaggcattttagtccctcacttttttctctgtttg 42686162  T
Q  664 ccaaataaatc 674  Q
     ||||||||||    
T  42686161 tcaaataaatc 42686151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 600 - 675
Target Start/End: Original strand, 3208520 - 3208595
Alignment:
Q  600 ttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||| |||| |||||||||||||||||||   |||||||||| || ||||||||||  ||||| |||||||||||    
T  3208520 ttttcattttggtcccataattaataaaacgtacgttttgatcccttattttttcctccgtttgtcaaataaatcc 3208595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 580 - 675
Target Start/End: Original strand, 18197163 - 18197258
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||| ||||||||| |  ||||| |||| |||||| ||||||||||||   | ||||| || |||||||||||||  |||||||||||||||||    
T  18197163 gtccctcaaataatttcaaattttcattttggtcccacaattaataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatcc 18197258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 564 - 675
Target Start/End: Original strand, 26886272 - 26886383
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||  ||||||||||||  |||||| || ||||| |||| |||  | ||||||||||| ||| ||||||||| ||||  |||  || ||||||    
T  26886272 cttattagattgtttggtcccttatttaatttcatattttcattttggtctaacaattaataaaaatggtgttttgatccctcacgtttgtctctgtttg 26886371  T
Q  664 ccaaataaatcc 675  Q
    ||||||||||||    
T  26886372 ccaaataaatcc 26886383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 53421851 - 53421764
Alignment:
Q  590 taatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccct 677  Q
    |||||| | |||||| ||||||||| | ||||||||||||   ||||||| || |||| ||||| || ||||||||||||||||||||    
T  53421851 taattttacgttttcattttagtcctacaattaataaaacgtacgttttggtccctcacttttttctctgtttgccaaataaatccct 53421764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 638
Target Start/End: Original strand, 35370913 - 35370987
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgtttt 638  Q
    ||||||||||| ||||||||||||  |||||| |||||||| ||||  ||||| ||||||||||| ||| |||||    
T  35370913 cttattagatcgtttggtcccttatttaatttcatgttttcattttgatcccacaattaataaaaatggtgtttt 35370987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 37735306 - 37735416
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| ||||  ||||||| ||||||||||| | |||||| |||| |||||||||||||||||||    |||||  || |||||||||| ||  |||||    
T  37735306 cttatttgatccattggtcctttaaataattttaagttttcattttggtcccataattaataaaacgtatgttttagtccctcatttttttcttcgtttg 37735405  T
Q  664 ccaaataaatc 674  Q
     ||||||||||    
T  37735406 tcaaataaatc 37735416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 675
Target Start/End: Original strand, 41544675 - 41544773
Alignment:
Q  577 ttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||| ||||||||||| | |||||| |||| |||| |||||||||| |||   |||||   || |||| |||||||| ||||||||||||||||||    
T  41544675 ttggtccattaaataatttcaagttttcattttggtcctataattaatataacgtacgtttaagtccctcactttttcctctgtttgccaaataaatcc 41544773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 628
Target Start/End: Original strand, 3811522 - 3811591
Alignment:
Q  559 tttgtcttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaa 628  Q
    |||| ||||||||||| |||||| || ||| |||||| |||||||| |||| |||||||| |||||||||    
T  3811522 tttggcttattagatcgtttggtaccctaactaatttcatgttttcattttggtcccatatttaataaaa 3811591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 751
Target Start/End: Complemental strand, 14745171 - 14745118
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaa 751  Q
    |||||||| | |||||||||||| ||||||||| ||||||||||||||| ||||    
T  14745171 tggaccaaccttaagagtggttcaccatagatcctattaattattttaatttaa 14745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 784 - 829
Target Start/End: Complemental strand, 27841594 - 27841549
Alignment:
Q  784 attggattacacaagtctattatatcttacgatgtaccaccaacac 829  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||    
T  27841594 attggattaggcaagtctattttatcttacgatgtaccaccaacac 27841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 693
Target Start/End: Original strand, 41263638 - 41263766
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||||| ||||||||||||  |||||| || ||||| |||| |||||| | ||| ||||| |||| ||||| ||  |||| |||| ||  |||||    
T  41263638 cttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacatttattaaaaatggcattttggtccgtcatctttttctccgtttg 41263737  T
Q  664 ccaaataaatccctagctgttaactttaac 693  Q
     ||| |||||||| || |||||||||||||    
T  41263738 tcaattaaatcccaag-tgttaactttaac 41263766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 672
Target Start/End: Complemental strand, 37736181 - 37736089
Alignment:
Q  580 gtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaa 672  Q
    |||||||||||||||| |||||||| |||| ||| || ||||||||||||   ||||||  || |||| ||||| ||  ||||||||||||||    
T  37736181 gtcccttaaataatttcatgttttcattttggtctcacaattaataaaacgtacgttttagtccctcacttttttctccgtttgccaaataaa 37736089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 829
Target Start/End: Original strand, 3208630 - 3208759
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||| | |||||||||| | ||||| ||| ||||||||||| ||| |||| || |||||| || |||||  |||| |  |||||||||| |  |||    
T  3208630 tggaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttgattttattttta-aaaatagaaccattggat-aggcaa 3208727  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||| | ||||||||||||||||| ||||||    
T  3208728 gtctaatttatcttacgatgtaccatcaacac 3208759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 671
Target Start/End: Original strand, 40244187 - 40244294
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| ||||  ||||||||||||||||||| | |||||| |||| ||| || ||||||||||||   | ||||| || ||||  |||||||  |||||    
T  40244187 cttatttgatccattggtcccttaaataatttcaagttttcattttggtctcacaattaataaaacgtacattttggtccctcaaattttcctccgtttg 40244286  T
Q  664 ccaaataa 671  Q
    ||||||||    
T  40244287 ccaaataa 40244294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 674
Target Start/End: Complemental strand, 36176597 - 36176512
Alignment:
Q  590 taatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctca-ttttttcctatgtttgccaaataaatc 674  Q
    |||||| |||||||| |||| |||||| |||||||||||     |||||| || |||| ||||||||| |||||||||||||||||    
T  36176597 taatttcatgttttcattttggtcccacaattaataaaatgtatgttttggtccctcatttttttcctctgtttgccaaataaatc 36176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 61851 - 61961
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    ||||||||| | ||||||||| |||||||||| |||||||| |||| ||| |||||||||||||| |||||||||  || ||||| ||||| |  |||||    
T  61851 cttattagaacgtttggtcccctaaataatttcatgttttcattttggtctcataattaataaaaatggcgttttagtccctcatcttttcttccgtttg 61950  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  61951 ccaaataaatc 61961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 565 - 693
Target Start/End: Complemental strand, 63246 - 63118
Alignment:
Q  565 ttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgc 664  Q
    |||||||||| ||||||||   |||||||||  ||||||| |||| |||||| ||||||||||  |||||||||  || ||||  |||| ||  ||||||    
T  63246 ttattagatcgtttggtcctccaaataatttcgtgttttcattttggtcccacaattaataaagatggcgttttagtccctcacatttttctccgtttgc 63147  T
Q  665 caaataaatccctagctgttaactttaac 693  Q
    |||||||||||||  ||||||| ||||||    
T  63146 caaataaatccctgactgttaagtttaac 63118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 697 - 792
Target Start/End: Complemental strand, 653 - 559
Alignment:
Q  697 atggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggatta 792  Q
    ||||||||| | |||||||||| | ||||||| |||||||| | |||||| |||| || |||||||| ||||||| ||||||||||||||||||||    
T  653 atggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatct-gttttttaaaaagatgaccattggatta 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 698 - 829
Target Start/End: Complemental strand, 43544 - 43416
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||||| |||||||||| | ||||||||| ||||||||||||||| |||| || |||||   | |||||| ||||||  |||||| |||||  |||    
T  43544 tggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga---ttttttttaaaaagagaaccatttgattaggcaa 43448  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| ||||| ||||| || |||| ||||    
T  43447 gtctattttatctaacgatatatcaccgacac 43416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 127433 - 127564
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||| ||| |||||||||||| ||| |||||| | ||||||||||| ||||||||| ||||||||||   |||||| || ||||| ||| |||  ||  |    
T  127433 cttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccctcatgtttgcctccgtcgg 127532  T
Q  664 ccaaataaatccctagctgttaactttaacct 695  Q
     |||||||||||||  | ||||||||||||||    
T  127533 tcaaataaatccctgacagttaactttaacct 127564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 123983 - 124080
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||| | ||||||||| | |||||| |||| |||||| ||||||||||||   | ||||| || |||| |||||||| ||||||||||||||||||    
T  123983 tggtccttcaaataatttcaagttttcattttggtcccacaattaataaaacgtacattttggtccctcactttttcctctgtttgccaaataaatcc 124080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 675
Target Start/End: Complemental strand, 125335 - 125238
Alignment:
Q  578 tggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    |||||||| ||||||||| |  ||||| |||| |||||| ||||||||||||   | ||||| || |||| ||||||||  |||||||||||||||||    
T  125335 tggtccctcaaataatttcaaattttcattttggtcccacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcc 125238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 697 - 792
Target Start/End: Complemental strand, 125203 - 125108
Alignment:
Q  697 atggaccaatcgtaagagtggttctccatagatcttattaa-ttattttaacttaagccatttgatcttgttttttcaaaagatgaccattggatta 792  Q
    ||||||||| | ||| |||||| | ||||||| |||||||| || |||||| |||| || |||||||  ||||||| ||||||||||||||||||||    
T  125203 atggaccaaccttaaaagtggtccaccatagaccttattaaatttttttaatttaaaccctttgatca-gttttttaaaaagatgaccattggatta 125108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 829
Target Start/End: Complemental strand, 54154 - 54025
Alignment:
Q  698 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaagccatttgatcttgttttttcaaaagatgaccattggattacacaa 797  Q
    |||||||| | ||| |||||| | ||||||||| ||||||||||||||| |||| |  |||||| ||  ||||  ||||||    ||||||||||  |||    
T  54154 tggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttt--ttttaaaaaagagtgtcattggattaagcaa 54057  T
Q  798 gtctattatatcttacgatgtaccaccaacac 829  Q
    ||||||| |||| |||||||||||||||||||    
T  54056 gtctattttatcatacgatgtaccaccaacac 54025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 54301 - 54191
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttg 663  Q
    |||||| ||||  ||||||||| ||||||||| | |||||  |||| ||| || ||||||||||||  |||||||| || ||||  |||||||  |||||    
T  54301 cttatttgatccattggtccctcaaataatttcaagttttaattttggtcgcacaattaataaaacgtgcgttttggtccctcaaattttcctccgtttg 54202  T
Q  664 ccaaataaatc 674  Q
    |||||||||||    
T  54201 ccaaataaatc 54191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 612 - 675
Target Start/End: Original strand, 108561 - 108624
Alignment:
Q  612 tcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatcc 675  Q
    ||||||||||||||||||   |||||||||| |||||||||||||   ||||||||||||||||    
T  108561 tcccataattaataaaacgtacgttttgatccctcattttttcctccatttgccaaataaatcc 108624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 676
Target Start/End: Original strand, 18833 - 18924
Alignment:
Q  585 ttaaataatttaatgttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccc 676  Q
    ||||||||||| | |||||| |||| |||||||| |||||||||||   |||||  || |||| ||||| ||  ||||||||||||||||||    
T  18833 ttaaataattttaagttttcattttggtcccatatttaataaaacttatgttttagtccctcactttttactccgtttgccaaataaatccc 18924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 1201 - 1135
Alignment:
Q  564 cttattagatcatttggtcccttaaataatttaatgttttcgttttagtcccataattaataaaact 630  Q
    |||| ||| ||||||||||||| |||||||||   |||||| |||| ||||||||| ||||||||||    
T  1201 cttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaact 1135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 600 - 674
Target Start/End: Original strand, 21163 - 21237
Alignment:
Q  600 ttttcgttttagtcccataattaataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatc 674  Q
    ||||| |||||||||||||||||||||||    | |||||||| || | ||||||||  ||||||||||||||||    
T  21163 ttttcattttagtcccataattaataaaaagtaccttttgatcccttagtttttcctccgtttgccaaataaatc 21237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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