View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4646-Insertion-3 (Length: 522)
Name: NF4646-Insertion-3
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4646-Insertion-3 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0169 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 58 - 522
Target Start/End: Original strand, 4442919 - 4443407
Alignment:
| Q |
58 |
cgtggttggaatcttttggtctttaagattgttgtggttgctactaagtttgtgtgccgaagattttgaggtgcaaattggagtatgtggaacactttga |
157 |
Q |
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| T |
4442919 |
cgtggttggaatcttttggtctttgagattgttgtggttgctactaagtttgtgtgccgaagattttgaggtgcaaattggagtatgtggaacactttga |
4443018 |
T |
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| Q |
158 |
ttacattattgtggtttctttttcgtgtagtagta-----------gttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatcttccaac |
246 |
Q |
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| T |
4443019 |
ttacatgattgtggtttctttttcgtgtagtagtatagtagtagtagttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatcttccaac |
4443118 |
T |
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| Q |
247 |
taatcctaaccatgaccatcattgtaaatgtaaacttaatatatgaatgtgtatttgtattatatttcatcaaacttttttcaagnnnnnnntcagtact |
346 |
Q |
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| T |
4443119 |
taatcctaaccatgaccatcattgtaaatgtaaacttaatatatgaatgtgtatttgtatt-----taatcaaacttttttcaagaaaaaaatcagtact |
4443213 |
T |
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| Q |
347 |
tggtacacaaggttcaatatt------------------tggctaagtgaaatagttcttttcctattgatttgaatttatctatttgtattttgaggag |
428 |
Q |
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| T |
4443214 |
tggtacacaaggttcaatattacagccaagatggcttgttggctaagtgaaatagttcttttcctattgatttgaatttatctatttgtattttgaggag |
4443313 |
T |
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| Q |
429 |
aacacaggaaagtcgttgaaatgtcgattttaacctttaaagattgactttcaaatcatgtttgtagtgtccactctcattatctatagcaagc |
522 |
Q |
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| T |
4443314 |
aacacaagaaagtcgttgaaatgtcgattttaacctttaaagattgactttcaaatcatgtttgtagtgtccactctcattatctatagcaagc |
4443407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 4445260 - 4445388
Alignment:
| Q |
60 |
tggttggaatcttttggtctttaagattgttgtggttgctactaagtttgtgtgccgaagattttgaggtgcaaattggagtatgtggaacactttgatt |
159 |
Q |
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| T |
4445260 |
tggttggaatcttatgctctttgagattgttgtggttgttactaagtttgtg---caaagattttgaggcgctaatagtagtatggtttacaatttgatt |
4445356 |
T |
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| Q |
160 |
acattattgtggtttctttttcgtgtagtagt |
191 |
Q |
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| T |
4445357 |
gcgtaattttgatttctttttcgtgtagtagt |
4445388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 44 - 296
Target Start/End: Original strand, 25775 - 26033
Alignment:
| Q |
44 |
tcatctatagcatacgtggttggaatcttttggtctttaagattgttgtggttgctactaagtttgtgtgccgaagattttgaggtgcaaattggagtat |
143 |
Q |
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| T |
25775 |
tcatctatagcatatgtggttggaatcttttggtctttgagattgttgtggttgctactaagtttgcatgcctaatattttaaggtgcaaattggagtat |
25874 |
T |
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| Q |
144 |
gtggaacactttgattacattattgtggtttctttttcgt---gtagtagtagttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatct |
240 |
Q |
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| T |
25875 |
gttgtacactttgattacatgattgtggtttctttttcgtgtagtagtagtagttacgaaacacgattgaatt--aaagaaaataaaacaaacgcaatct |
25972 |
T |
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| Q |
241 |
tccaactaatcctaaccatga-----ccatcattgtaaatgtaaacttaatatatgaatgt |
296 |
Q |
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| T |
25973 |
tccaactaatgctaaccaggagcaatgcaacattgtaaatgtgaacttaacatatgaatgt |
26033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 26105 - 26168
Alignment:
| Q |
367 |
ttggctaagtgaaatagttcttttcctattgatttgaatttatctatttgtattttgaggagaa |
430 |
Q |
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| T |
26105 |
ttggctaagtgaaatagttcttttcctaatgatttgaatttatctatttatattttgatgagaa |
26168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 8365848 - 8365806
Alignment:
| Q |
10 |
tagctgattacaaaccttgtatttatgagtttgatcatctata |
52 |
Q |
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| T |
8365848 |
tagcttattacaaaccttgtattcatgagtttgatcttctata |
8365806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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