View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4646-Insertion-5 (Length: 129)
Name: NF4646-Insertion-5
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4646-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 1e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 1407404 - 1407283
Alignment:
| Q |
8 |
cgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttcaaatctcttactatttacaatcatgatgtt |
107 |
Q |
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| T |
1407404 |
cgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttctaatctcttactatttacaatcatgatgtt |
1407305 |
T |
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| Q |
108 |
tgatctctctttctttagtcca |
129 |
Q |
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| T |
1407304 |
tgatctctctttctttagtcca |
1407283 |
T |
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Target: chr5; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 1364022 - 1364121
Alignment:
| Q |
10 |
ttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttcaaatctcttactatttacaatcatgatgtttg |
109 |
Q |
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| T |
1364022 |
ttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttctaa--tcttactatttacaattatgatgtttg |
1364119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 1369583 - 1369656
Alignment:
| Q |
17 |
ctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttcaaatctcttacta |
90 |
Q |
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| T |
1369583 |
ctgaagaaaacagaaaggagttggatagagaaaaaattgaacatttattacatgtattttctaatcccttacta |
1369656 |
T |
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