View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4646_low_1 (Length: 580)

Name: NF4646_low_1
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4646_low_1
NF4646_low_1
[»] chr5 (6 HSPs)
chr5 (23-281)||(7141214-7141472)
chr5 (307-562)||(7140961-7141216)
chr5 (35-160)||(7154105-7154230)
chr5 (308-522)||(7152832-7153046)
chr5 (39-119)||(7131652-7131732)
chr5 (330-417)||(7130752-7130839)
[»] chr6 (3 HSPs)
chr6 (41-118)||(12425527-12425604)
chr6 (46-118)||(12268081-12268153)
chr6 (74-156)||(12438646-12438728)
[»] chr4 (2 HSPs)
chr4 (46-118)||(55958761-55958833)
chr4 (41-115)||(55955200-55955274)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 7141472 - 7141214
Alignment:
Q  23 agttccttaccattgaatgcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141472 agttccttaccattgaatgcttgtcttaattcagcttgtgccttctccctcactcttggatttttcatcatttctgacatagcccattctattgttgtcg 7141373  T
Q  123 atgatgtatcagttccagcaacaaatacatcctgaaattatagaagaacatgtatagaattcaataatattggactagcaattgcaccttaaaaccatag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141372 atgatgtatcagttccagcaacaaatacatcctgaaattatagaagaacatgtatagaattcaataatattggactagcaattgcaccttaaaaccatag 7141273  T
Q  223 gctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141272 gctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat 7141214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 307 - 562
Target Start/End: Complemental strand, 7141216 - 7140961
Alignment:
Q  307 tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7141216 tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatcc 7141117  T
Q  407 acaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatctaagattttgtctaccc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7141116 acaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatccaagattttgtctaccc 7141017  T
Q  507 ttttgtgaattttctcaacannnnnnnncatccctgttagtacatgaataagtttc 562  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  7141016 ttttgtgaattttctcaacattttttttcatccctgttagtacatgaataagtttc 7140961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 7154230 - 7154105
Alignment:
Q  35 ttgaatgcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcag 134  Q
    |||||||||| ||||| |||||||||||| || |  ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  7154230 ttgaatgcttctcttagttcagcttgtgctttttctctcacacttggatttttcatcatttctgacatagcccactctattgttgtcgatgttgtatcag 7154131  T
Q  135 ttccagcaacaaatacatcctgaaat 160  Q
    |||| ||||||||||| |||||||||    
T  7154130 ttccggcaacaaatacgtcctgaaat 7154105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 308 - 522
Target Start/End: Complemental strand, 7153046 - 7152832
Alignment:
Q  308 ataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcca 407  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||| |||| | || || ||||||| |  ||||||||||||||| |||||||||||| |    
T  7153046 ataagttcattgtaactaacccaaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatcta 7152947  T
Q  408 caagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatctaagattttgtctaccct 507  Q
     ||||||||| || |||| |||| | ||||   |||| ||| ||||| ||| |||||||||||||| ||| | ||  || || | |||||||||||| |     
T  7152946 gaagatcttcgttatcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatgattttgtctacacg 7152847  T
Q  508 tttgtgaattttctc 522  Q
     ||||||||||||||    
T  7152846 cttgtgaattttctc 7152832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 7131732 - 7131652
Alignment:
Q  39 atgcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttg 119  Q
    |||||| ||||| ||||||||||||||| ||| |||| ||||| |||||||||| ||||||||| |||||| |||||||||    
T  7131732 atgcttctcttatttcagcttgtgccttgttcatcacacttgggtttttcatcagttctgacatggcccatactattgttg 7131652  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 7130839 - 7130752
Alignment:
Q  330 aaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatccacaagatcttc 417  Q
    |||||||||||||||||||| |  |||| | | |||  |||||||||||||||| ||||| ||||||||| ||||| |||||||||||    
T  7130839 aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc 7130752  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 12425527 - 12425604
Alignment:
Q  41 gcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt 118  Q
    |||| ||||| ||||||||||||||||||| |||||||||| |||||||| |  |||||||||||||| |||||||||    
T  12425527 gcttctcttatttcagcttgtgccttcttcatcactcttgggtttttcattaactctgacatagcccactctattgtt 12425604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 12268153 - 12268081
Alignment:
Q  46 tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt 118  Q
    ||||| |||||||||||| ||| |||||||||| || |||||||| |  |||||||||||||| |||||||||    
T  12268153 tcttatttcagcttgtgctttcatcctcactctagggtttttcattaactctgacatagcccaatctattgtt 12268081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 12438646 - 12438728
Alignment:
Q  74 actcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctg 156  Q
    |||||||||||||||| ||||||||| |  ||||||||||  ||||| | ||||||  || ||||||||| ||||| ||||||    
T  12438646 actcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg 12438728  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 55958761 - 55958833
Alignment:
Q  46 tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt 118  Q
    ||||| ||||| ||||||||||||| |||||||||| ||||||||||  |||||||| ||||| |||||||||    
T  55958761 tcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt 55958833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 55955200 - 55955274
Alignment:
Q  41 gcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctatt 115  Q
    |||| ||||| ||| | |||||| |||||| |||||||||  ||||||||||  |||||||||||||| ||||||    
T  55955200 gcttctcttatttcggattgtgctttcttcatcactcttgagtttttcatcaactctgacatagcccactctatt 55955274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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