View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4646_low_2 (Length: 480)
Name: NF4646_low_2
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4646_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 29174973 - 29174754
Alignment:
| Q |
12 |
atgaacggtcaagattaaaatactcttatctttatcatagtgtgctcccacaatgcagttcactcagttcatcctcaagcaaaggatgtttgactcaagg |
111 |
Q |
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| T |
29174973 |
atgaacggtcaagattaaaatactcttatctttat----gtgtgctcccacaatgcagttcactcagttcatcctcaagcaaaggatgtttgactcaagg |
29174878 |
T |
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| Q |
112 |
acctatctgttgttgcacccactccgtcggtgaccaacaaattgatctccataatccaagacaaaattgaacaaaaaccataaaagcgtgataccaatcc |
211 |
Q |
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| T |
29174877 |
acctatctgttgttgcacccactccgtcgatgaccaacaaattgatctccataatccaagacaaaatcgaacaaaaaccataaaagcgtgataccaatcc |
29174778 |
T |
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| Q |
212 |
tgtacaaatctagaaggcatttaa |
235 |
Q |
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|| ||||||||||||||||||||| |
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| T |
29174777 |
tgaacaaatctagaaggcatttaa |
29174754 |
T |
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