View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4646_low_3 (Length: 475)

Name: NF4646_low_3
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4646_low_3
NF4646_low_3
[»] chr2 (4 HSPs)
chr2 (305-475)||(16288987-16289154)
chr2 (316-401)||(16270952-16271037)
chr2 (431-475)||(43516400-43516444)
chr2 (431-475)||(44820943-44820987)
[»] chr4 (3 HSPs)
chr4 (187-277)||(30941155-30941245)
chr4 (131-168)||(30941244-30941281)
chr4 (431-475)||(29757621-29757665)
[»] scaffold0060 (1 HSPs)
scaffold0060 (431-475)||(13264-13308)
[»] chr8 (3 HSPs)
chr8 (431-475)||(37963276-37963320)
chr8 (431-475)||(359327-359371)
chr8 (431-475)||(21142481-21142525)
[»] chr3 (7 HSPs)
chr3 (431-475)||(3150032-3150076)
chr3 (432-475)||(33781507-33781550)
chr3 (430-475)||(24613625-24613670)
chr3 (431-475)||(5377809-5377853)
chr3 (431-475)||(32558921-32558965)
chr3 (431-475)||(33551590-33551633)
chr3 (431-475)||(39870456-39870500)
[»] chr1 (7 HSPs)
chr1 (431-475)||(32849942-32849986)
chr1 (431-475)||(8322523-8322567)
chr1 (431-475)||(11429228-11429272)
chr1 (431-475)||(11431342-11431386)
chr1 (431-475)||(24437076-24437120)
chr1 (431-475)||(31809991-31810035)
chr1 (431-475)||(32847816-32847860)
[»] chr7 (2 HSPs)
chr7 (431-475)||(37556545-37556589)
chr7 (431-475)||(41591517-41591561)
[»] chr5 (2 HSPs)
chr5 (431-475)||(1418949-1418993)
chr5 (431-475)||(41281876-41281920)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 305 - 475
Target Start/End: Complemental strand, 16289154 - 16288987
Alignment:
Q  305 tgaagtagaaatagtgagatttatcgtatataatttaatattcatcggatcttatgcaagtggttgatgctcaatgtgtgtgactgttgtatatctcata 404  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    || ||||||||||    
T  16289154 tgaagtagaaaaagtgagatttatcgtatataatttaatattcatcagatcttatgcaagtggttgatgctcaatgtgtgtga---gtgaatatctcata 16289058  T
Q  405 tttgaattatactttnnnnnnntaatcttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    ||||| |||||||||       ||  |||||||||||||||| ||||||||| ||||||||||||||||||    
T  16289057 tttgatttatactttaaaaaaataggcttaaatatgtaaaagatccctgtaagttgacgcgttttttgttt 16288987  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 16271037 - 16270952
Alignment:
Q  316 tagtgagatttatcgtatataatttaatattcatcggatcttatgcaagtggttgatgctcaatgtgtgtgactgttgtatatctc 401  Q
    |||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  16271037 tagtgacatttaacgtatgtaatttaataatcatcggatcttatgcaagtggttgatgttcaatgtgtgtgagtgttgtatatctc 16270952  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 43516400 - 43516444
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  43516400 cttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttt 43516444  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 44820987 - 44820943
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  44820987 cttaaatatgtaaaaggtccctgtaaattcgcgcattttttgttt 44820943  T

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Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 30941245 - 30941155
Alignment:
Q  187 ggcatgtttattgcaagtttctatgtgaaaaataaaacgtttttcttacaataattggttttaaaaggctttatcggtttgttatagattt 277  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30941245 ggcatgtttattacaagtttctatgtgaaaaataaaacgtttttcttacaataattggttttaaaaggctttatcggtttgttatagattt 30941155  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 30941281 - 30941244
Alignment:
Q  131 gattatacaaattatcaaagatatgctataatgttagg 168  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30941281 gattatacaaattatcaaagatatgctataatgttagg 30941244  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 29757665 - 29757621
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| || |||| ||||| ||||    
T  29757665 cttaaatatgtaaaaggtccctgtaagttcacgcatttttggttt 29757621  T

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Target: scaffold0060 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 13308 - 13264
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| || |||| ||||||||||    
T  13308 cttaaatatgtaaaaggtccctgtaagttcacgcattttttgttt 13264  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 37963276 - 37963320
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||    
T  37963276 cttaaatatgtaaaaggtccttgtaacttagcgcgttttttgttt 37963320  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 359371 - 359327
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  359371 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttt 359327  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 21142481 - 21142525
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  21142481 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttt 21142525  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 3150076 - 3150032
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| || |||||||||| ||||    
T  3150076 cttaaatatgtaaaaggtccctgtaagttaacgcgtttttggttt 3150032  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 33781550 - 33781507
Alignment:
Q  432 ttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||    
T  33781550 ttaaatatgtaaaaggtccctgtaagttcgcgcgttttttgttt 33781507  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 24613670 - 24613625
Alignment:
Q  430 tcttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    ||||||||||||||||||||||||||| ||  ||| ||||||||||    
T  24613670 tcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttt 24613625  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 5377809 - 5377853
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||||||||||| ||| ||| ||||||||||    
T  5377809 cttaaataagtaaaaggtccctgtaaattggcgcattttttgttt 5377853  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 32558921 - 32558965
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  || |||||||||||    
T  32558921 cttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttt 32558965  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 33551590 - 33551633
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||    
T  33551590 cttaaatatgtaaaagg-ccctgtaagttggcgcgttttttgttt 33551633  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 39870456 - 39870500
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||| | ||||| ||||||||||||||||||    
T  39870456 cttaaataagtaaaaggttcttgtaagttgacgcgttttttgttt 39870500  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 32849986 - 32849942
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||    
T  32849986 cttaaataagtaaaaggtccctgtaaattggcgcgttttttgttt 32849942  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 8322523 - 8322567
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  8322523 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttt 8322567  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 11429228 - 11429272
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| |||||||||| |||||| ||| ||||||||||||||    
T  11429228 cttaaataagtaaaaggtctctgtaaattggcgcgttttttgttt 11429272  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 11431386 - 11431342
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||||||||||| ||| ||||||||| ||||    
T  11431386 cttaaataagtaaaaggtccctgtaagttggcgcgtttttcgttt 11431342  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 24437076 - 24437120
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  || |||||||||||    
T  24437076 cttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttt 24437120  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 31809991 - 31810035
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  31809991 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttt 31810035  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 32847816 - 32847860
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||||||||||| ||| ||||||||| ||||    
T  32847816 cttaaataagtaaaaggtccctgtaagttggcgcgtttttggttt 32847860  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 37556589 - 37556545
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||||||||||| |||  |||||||||||||    
T  37556589 cttaaataagtaaaaggtccctgtaaattggtgcgttttttgttt 37556545  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 41591517 - 41591561
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  41591517 cttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttt 41591561  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 1418993 - 1418949
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    ||||||||||||||  |||||||||| |||||| |||||||||||    
T  1418993 cttaaatatgtaaatcgtccctgtaatttgacgtgttttttgttt 1418949  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 41281876 - 41281920
Alignment:
Q  431 cttaaatatgtaaaaggtccctgtaacttgacgcgttttttgttt 475  Q
    |||||||| ||||||||||||||||| |||| | |||||||||||    
T  41281876 cttaaataagtaaaaggtccctgtaagttgatgtgttttttgttt 41281920  T

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