View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4646_low_4 (Length: 423)
Name: NF4646_low_4
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4646_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 10007046 - 10006646
Alignment:
| Q |
18 |
gaaacaagtcatgataatgaccacaaaatatggaaactactccttggagataatctaagatactctaatagtaataatagaaaggtctaggagataaact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10007046 |
gaaacaagtcatgataatgaccacaaaatatggaaactactccttggagataatctaagatactctaatagtaataatagaaaggtctaggagataaaca |
10006947 |
T |
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| Q |
118 |
aagatattctaacataatctcaaagatattctgagatattttatatattctctaacagagataatcacccagcatttcgagtttccattcttatcaatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10006946 |
aagatattctaacataatctcaaagatattctgagatattttatatattctctaacagagataatcacccagcatttcgagtttccattcttatcaatat |
10006847 |
T |
|
| Q |
218 |
tatcacacttatggttacaaagtcaaaatgtggctgtttgatttgtagtaaatagcatttatccagtttccattcttatctatgtaactggactatctac |
317 |
Q |
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| T |
10006846 |
tatcacacttatggttacaaagtcaaaatgtggctgtttgatttgtagtaaatagcatttatccagtttccattcttatctatgtaactggactatctac |
10006747 |
T |
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| Q |
318 |
ttaaaaagctacatattgttcctttgatgttgatgcaacaggatggatatttttgttgaaatgataaagttgaaaaagtctgggaaggatgtacctatgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10006746 |
ttaaaaagctacatattgttcctttgatgttgatgcaacaggatggatatttttgttgaaatgataaagttgaaaaagtctgggaaggatgtacctatgc |
10006647 |
T |
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| Q |
418 |
t |
418 |
Q |
| |
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| T |
10006646 |
t |
10006646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 23726500 - 23726561
Alignment:
| Q |
104 |
ctaggagataaactaagatattctaacataatctcaaagatattctgagatattttatatat |
165 |
Q |
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| T |
23726500 |
ctaggagataaactaagatactctaacataataccaaacatattatgagatatttcatatat |
23726561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 38888166 - 38888226
Alignment:
| Q |
26 |
tcatgataatgaccacaaaatatggaaactactccttggagataatctaagatactctaat |
86 |
Q |
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|||||||||| |||| ||||||||||||| || | ||||||||| |||||||||||||| |
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| T |
38888166 |
tcatgataataaccaagtaatatggaaactaatcttaggagataatataagatactctaat |
38888226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 25443146 - 25443185
Alignment:
| Q |
106 |
aggagataaactaagatattctaacataatctcaaagata |
145 |
Q |
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| T |
25443146 |
aggagataaactaagatagtctaacataatatcaaagata |
25443185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 10613630 - 10613682
Alignment:
| Q |
104 |
ctaggagataaactaagatattctaacataatctcaaagatattctgagatatt |
157 |
Q |
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||||||||||||||||||||||||| | |||| || |||||||| ||||||||| |
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| T |
10613630 |
ctaggagataaactaagatattctagcctaatatc-aagatattatgagatatt |
10613682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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