View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4646_low_6 (Length: 339)
Name: NF4646_low_6
Description: NF4646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4646_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 45000616 - 45000962
Alignment:
| Q |
1 |
atcatgcatttggaaatgtatgtgtacacatattgctaatgatgaaaagtaaattaaagagtatattttttaa-------tatcattctcatgtaattt- |
92 |
Q |
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| T |
45000616 |
atcatgcatttggaaatgtatgtgtacacatattgctaatgatgaaaagtaaattaaagagtatattttttaaaattggttatcattcacatataatttt |
45000715 |
T |
|
| Q |
93 |
------------ctaaagtcgagtaaaaatacaatgaacgacaaaactcttttttaagagatttaatgccgttgcattctcgtggttgaatttgaattca |
180 |
Q |
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| T |
45000716 |
aaagatcaatctcttaagtcgagtaagactataatggacgacaaaactcttttttaagagatttgatgccgttacattctcgtggttgaatttgaattca |
45000815 |
T |
|
| Q |
181 |
agatatctgattacgctaaaagagtctgaatcatattgaatatgtccattttgtgcattgtttcaaaaatattgttttatatggacataggtagtatagt |
280 |
Q |
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| T |
45000816 |
agatatctgattacgctaaaagagtctgaatcatattgaatatgtccattttatgcattgtttcaaaaatattgttttatatggatataggtagtatagt |
45000915 |
T |
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| Q |
281 |
gaaagagtagaattttatagttgattcaagattgaagaaaacctgat |
327 |
Q |
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| T |
45000916 |
gaaagagtagaattttatagttgattcaaaattgaagaaaacctgat |
45000962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 2747140 - 2747088
Alignment:
| Q |
111 |
acaatgaacgacaaaactcttttt-taagagatttaatgccgttgcattctcg |
162 |
Q |
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| T |
2747140 |
acaatgaatgacaaaactctctttctaagagatttaatatcgttgcattctcg |
2747088 |
T |
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