View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-15 (Length: 611)
Name: NF4647-Insertion-15
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Original strand, 3424655 - 3425268
Alignment:
| Q |
8 |
gtttcttcaaattgcatggagttagcactaaaggttagaaaaatggcatacnnnnnnnnnnn------tacatttagttaatattcattaggataattta |
101 |
Q |
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| T |
3424655 |
gtttcttcaaattgcatggagttagcactaaaggttagaaaaatggcatacaaaaaaaataaaaaaaatacatttggttaatattcattaggataattta |
3424754 |
T |
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| Q |
102 |
atttagattatatttgcatttaaatttaa----tgcaggaaagacgtattaataatagtagtgatggaaaaagaaaagaatgtggtggtaagttgctttg |
197 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3424755 |
atttagattatatttgcatttaaatttaattaatgcaggaaagacgtattaataatagtagtgatggaaaaagaaaagaatgtggtggtaagttgctttg |
3424854 |
T |
|
| Q |
198 |
gagggctttccaatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaaagt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3424855 |
gagggctttccaatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaaagt |
3424954 |
T |
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| Q |
298 |
gaccctcatcaaccatagctatgcattgatcttcttccacaatgattcttgttaataatcatgtaatatgtatatgtgcatgtgtggattaaaatattga |
397 |
Q |
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| T |
3424955 |
gaccctaatcaaccatagctattcattgatcttcttccacaatgattcttgttaataatcatgtaatatgtatatgtgcatgtgtggattaaaatattga |
3425054 |
T |
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| Q |
398 |
cattgactgagatacctaaagtcgagannnnnnnnnnnnnnnnatatgaaaaaatgtcaatccatttttgtttaaagccaaaatgaatatattgaaacca |
497 |
Q |
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| T |
3425055 |
caagtgctgagatacctaaagtcgagattttattttttgttttatatgaaaaaatgtcaatccatttttgtttaaagccaaaatgaatatattgaaacca |
3425154 |
T |
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| Q |
498 |
tgtgctcaaccaacctgtaaattcttatgatgtgatggattattacatctacaccgatgattaagagagataccgaatgaattaattgttaattgctata |
597 |
Q |
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| T |
3425155 |
tgtgctcaaccaacctgtaaattcttatgatgtgatggattattacatctacaccgatgattaagagagataccgaatgaattaattgttaattgctata |
3425254 |
T |
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| Q |
598 |
caagtaagtaaacc |
611 |
Q |
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| T |
3425255 |
caagtaagtaaacc |
3425268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 11916754 - 11916422
Alignment:
| Q |
8 |
gtttcttcaaattgcatggagttagcactaaaggttagaaaaatggcatacnnnnnnnnnnntacatttagttaatattcattaggataatttaatttag |
107 |
Q |
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| T |
11916754 |
gtttcctcaaattgcatagagttaacactaaaggttagaaaaatgtcatatcaaaaaaaaaata--tttggtaaatcttcattaggataatttaatttag |
11916657 |
T |
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| Q |
108 |
attatatttgcatttaaatttaatgcaggaaagacgtattaataatagtagtgatggaaaaagaaaagaatgtggtggtaagttgctttggagggctttc |
207 |
Q |
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| T |
11916656 |
attaaatttgcatttaaatttaatgcaggaaagacgcattaataataatagtgatgggaaaagaaaagaatgtggtggtaagttgctttggagggctttc |
11916557 |
T |
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| Q |
208 |
caatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaaagtgaccctcatc |
307 |
Q |
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| T |
11916556 |
caatttgcatttagggtttatacatttgctggtggacatgatgatcgtgctgacaaactcataagagaattggctaaggaaattgaaagtgaccctaatc |
11916457 |
T |
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| Q |
308 |
aaccatagctatgcattgatcttcttccacaatgat |
343 |
Q |
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| T |
11916456 |
aaccatggctatgttttgatctt-ttctacaatgat |
11916422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 524 - 604
Target Start/End: Complemental strand, 11914863 - 11914783
Alignment:
| Q |
524 |
atgatgtgatggattattacatctacaccgatgattaagagagataccgaatgaattaattgttaattgctatacaagtaa |
604 |
Q |
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| T |
11914863 |
atgatgtgatggattattacatctacaccaatgaataagagagatactgaatgaattaatagttgatttctatacaagtaa |
11914783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 35742232 - 35742140
Alignment:
| Q |
191 |
tgctttggagggctttccaatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggcta |
283 |
Q |
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| T |
35742232 |
tgctatggagggcgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgacacgttaacaagagaattggcta |
35742140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 534
Target Start/End: Original strand, 6607320 - 6607363
Alignment:
| Q |
491 |
gaaaccatgtgctcaaccaacctgtaaattcttatgatgtgatg |
534 |
Q |
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| T |
6607320 |
gaaaccatgtgctcaaccaacatataaattcttatgatgtgatg |
6607363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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