View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647-Insertion-16 (Length: 590)

Name: NF4647-Insertion-16
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647-Insertion-16
NF4647-Insertion-16
[»] chr1 (2 HSPs)
chr1 (8-590)||(8843688-8844272)
chr1 (27-144)||(8846365-8846480)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 8844272 - 8843688
Alignment:
Q  8 agttttccctcattgaagagtcatgagaaatgtggttttgttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatcaaaagt 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8844272 agttttccatcattgaagagtcatgagaaatgtggttttgttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatcaaaagt 8844173  T
Q  108 gaagaaagatcatggatagttaatgaagcacaatctttttattaccatgtcaaagctaatgaacatgtttggccagtaagtgttttgcatccattacaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8844172 gaagaaagatcatggatagttaatgaagcacaatctttttattaccatgtcaaagctaatgaacatgtttggccagtaagtgttttgcatctattacaat 8844073  T
Q  208 tatttccttttgaatacaatatctcttctactttgccatataataattctctcgagtgtctatttccttatataagtgtgtgttattgtgtatagaattt 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8844072 tatttccttttgaatacaatatctcttctactttgctatataataattctctcaagtgtctatttccttatataaatgtgtgttattgtgtatagaattt 8843973  T
Q  308 gattgtttaatcattaataggatataagacttggatggcaaatcattgttggtcccttgattggaatctttggagctccatttggaagtgtaggtggagt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8843972 gattgtttaatcattaataggatataagacttggatggcaaatcattgttggtaccttgattggaatctttggagcttcatttggaagtgtaggtggagt 8843873  T
Q  408 tggtggtggtggcatctttgttccaatgctaatcttgattatt-gatttgatgcaaaatcaaccactgctatttcaaaatgtaaga-cctctatagttgt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||    
T  8843872 tggtggtggtggcatctttgttccaatgctaatcttgattattggatttgatgcaaaatcagcaactgctatttcaaaatgtaagagtctctatagttgt 8843773  T
Q  506 tcatgacaaagtcaatatatatccatcacaattatcctctttagaaactgatcgttctcaatggatctttgaagttgagatttct 590  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  8843772 tcatgacaaagtcaatagatatccatcacaattatcctctttagaaactgatttttctcaatggatctttgaaattgagatttct 8843688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 8846480 - 8846365
Alignment:
Q  27 gtcatgagaaatgtggtttt-gttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatcaaaagtgaagaaagatcatggata 125  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| ||| ||||||||  | ||||| ||| |||  ||||||||||    
T  8846480 gtcatgagaaacgtggtttttgttttcatacattcttttgtttgttcttctcatctttggtgttaatagaagtaccaaaattgaggaatcatcatggata 8846381  T
Q  126 gttaatgaagcacaatctt 144  Q
    |   |||||||||||||||    
T  8846380 g---atgaagcacaatctt 8846365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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