View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-17 (Length: 533)
Name: NF4647-Insertion-17
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 201 - 533
Target Start/End: Complemental strand, 40166132 - 40165800
Alignment:
| Q |
201 |
cttactaatgtgataaaacatgttgtagagcaattaaacatgttgtgacagtggtggcctccgatccaaaacaaaacattttcgtacacgacactcacct |
300 |
Q |
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| T |
40166132 |
cttactaatgtgataaaacatgttgtagagcaattaaacatgttgtgacagtggtggcctccgatccaaaacaaaacattttcgtacacgacactcacct |
40166033 |
T |
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| Q |
301 |
tgatacagcagcagatggtcgatcgggatgtgtaacttacaagaacacaatagatctaaagttaaagacaactctttgnnnnnnnnnnnnnnnnnncaca |
400 |
Q |
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| T |
40166032 |
tgatacagcagcagatggtcgatcgggatgtgtaacttacaagaacacaatagatctaaagttaaagacaactctttgtttttttaatttatttttcaca |
40165933 |
T |
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| Q |
401 |
ccgtataatattgcaacttttctgatattcttgcgttttaattcactatttgacaaaatggtgaggaaacttagaacacattttttccggaaaaggagga |
500 |
Q |
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| T |
40165932 |
ccgtataatattgcaacttttctgatattcttgcgttttaattcactatttgacaaaatggtgaggaaacttggaacacattttttccggaaaaggagga |
40165833 |
T |
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| Q |
501 |
ggaaaattgctcatcaacgttgcctttacctta |
533 |
Q |
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| T |
40165832 |
ggaaaattgctcatcaacgttgcctttacctta |
40165800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 40166335 - 40166185
Alignment:
| Q |
7 |
aatacaaacttatgctcgaagactatacatcttaaagaattttgaacaaccttaattatt------------aatgaaatgtacaactttcaataaaatg |
94 |
Q |
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| T |
40166335 |
aatacaaacttatgctcgaagacta--catcttaaagaattttgaacaaccttaattattttttggatggaaaatgaaatgtacaactttcaataaaatg |
40166238 |
T |
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| Q |
95 |
tttttatctttagtggacgtataaatatccgatgacacgtgttaacattttac |
147 |
Q |
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| T |
40166237 |
tttttatctttagtagacgtataaatatccgaggacacgtgttaacattttac |
40166185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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