View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-18 (Length: 531)
Name: NF4647-Insertion-18
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Complemental strand, 38277529 - 38276996
Alignment:
| Q |
8 |
ttttattctgttctttaaagtttnnnnnnntatatgtttgtgtttgttgatatgtggctaaaaacgtgaagtgagattacatcatgattgatgatcacat |
107 |
Q |
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| T |
38277529 |
ttttattctgttctttaaagtttaaaaaaatatatgtttgtgtttgttgatatgtggctaaaaacgtgaagtgagattacatcatgattgatgatcacat |
38277430 |
T |
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| Q |
108 |
aatatattggttctattatatataaatagtattcacttgtgcttatgttggtagctggattattattgacaactgaatcaaacaattccaagatattata |
207 |
Q |
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| T |
38277429 |
aatatattggttctattatatataaatagtattcacttgtgcttatgttggtagctggattattattgacaactgaatcaaacaattccaagatattata |
38277330 |
T |
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| Q |
208 |
gcctatgatctatttttgttattttatatataccagttgcaaatctttgctcgtaaatttgccggctttcagagacaactagaaagtcaaataatatcgt |
307 |
Q |
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| T |
38277329 |
gcctatgatctatttttgttattttatatataccatttgcaaatctttgctcgtcaatttgccggctttcagagacaactagaaagtcaaataatatcgt |
38277230 |
T |
|
| Q |
308 |
-gt---nnnnnnntcagaaatat-----gttgcactagagctcggaaccgtggcagcctatagcaggccgtatataataataagcataagattatctgag |
398 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38277229 |
agtaaaaaaaaatacagaaatatgttacgttgcactagagctcggaaccgtggcagcctatagcaggccgtatataataataagcataagattctctgag |
38277130 |
T |
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| Q |
399 |
ttttaatgtnnnnnnnnnntgtaattccatttctttatattcatataatagacccatgtcatcaatgggaaatagctgctgat-aaaaaatggattcaaa |
497 |
Q |
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| T |
38277129 |
ttttaatagtaaaaaaaatagtaattccatttctttatattcatatactagacccatgtcatcaatgggaaatagctgctgataaaaaaatggattcaaa |
38277030 |
T |
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| Q |
498 |
tgcattaatgtaagctgaagaactaatcaagtga |
531 |
Q |
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| T |
38277029 |
tgcattaatgtaagctgaagaactaatcaagtga |
38276996 |
T |
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