View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-19 (Length: 522)
Name: NF4647-Insertion-19
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-19 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 266
Target Start/End: Complemental strand, 13485418 - 13485158
Alignment:
| Q |
6 |
caggttccctcttgagatactgagtcaaatgttgaggatggtgtcctagacatcatgttctctagtagaagaaaagttggtgggaagaggatccatgtga |
105 |
Q |
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| T |
13485418 |
caggttccctcttgagatactgagtcaaatgttgaggatgatgtcctagacatcatgttctctagtagaagaaaagttgttcggaagaggatccatgtga |
13485319 |
T |
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| Q |
106 |
atgtccattcttctcccatggatattgtgtttgttcactctaaatcaagtgttcagaagtggaagtatgtgtttcaaagaaatggttgctttcttgtgct |
205 |
Q |
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| T |
13485318 |
atgtccccacttctccaatggatattgtgtctgttcactccaaatcaagtgttcagaagtggaagtatgtgtttcaaagaaatggttgctttcttgtgct |
13485219 |
T |
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| Q |
206 |
agtttgagtgtgaaatatgcaattccgaacatgatcggtggagcaaattgggcacctacaa |
266 |
Q |
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| T |
13485218 |
agtttgagtgtgaagtatggaattccaaacatgatcggtggaacaaattgggcacctacaa |
13485158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 13485157 - 13485123
Alignment:
| Q |
283 |
tacaactgggatggccatgctgatttttctcatag |
317 |
Q |
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| T |
13485157 |
tacaactgggatggccatgctgatttttctcatag |
13485123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 168559 - 168736
Alignment:
| Q |
25 |
ctgagtcaaatgttgaggatggtgtcctagacatcatgttctctagtagaagaaaagttggtgggaagaggatccatgtgaatgtccattcttctcccat |
124 |
Q |
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| T |
168559 |
ctgagccagatgttgaggatgatgtcctggacatcgtgtcctctagtagaagaaaagttggttggaagaggatctctttgaatgtcccgtctgctcccct |
168658 |
T |
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| Q |
125 |
ggatattgtgtttgttcactctaaatcaagtgttcagaagtggaagtatgtgtttcaaagaaatggttgctttcttgt |
202 |
Q |
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| T |
168659 |
ggatattgtgtcttttcactctaaagcaagtgtttggaagtggaagtacgtgtttcaaagaaagggttgctttcttgt |
168736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 168753 - 168824
Alignment:
| Q |
247 |
agcaaattgggcacctacaaatcatacctctagtattac-aactgggatggccatgctgatttttctcatag |
317 |
Q |
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| T |
168753 |
agcaaattaggcacctacaaatcatacctctagtattacaaactgggttggccaagatgatttttctcatag |
168824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 14648733 - 14648556
Alignment:
| Q |
25 |
ctgagtcaaatgttgaggatggtgtcctagacatcatgttctctagtagaagaaaagttggtgggaagaggatccatgtgaatgtccattcttctcccat |
124 |
Q |
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| T |
14648733 |
ctgagccagatgttgaggatgatgtcctggacatcgtgtcctctagtagaagaaaagttggttggaagaggatctctttgaatgtcccgtctgctcccct |
14648634 |
T |
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| Q |
125 |
ggatattgtgtttgttcactctaaatcaagtgttcagaagtggaagtatgtgtttcaaagaaatggttgctttcttgt |
202 |
Q |
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| T |
14648633 |
ggatattgtgtcttttcactctaaagcaagtgtttggaagtggaagtacgtgtttcaaagaaagggttgctttcttgt |
14648556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 14648539 - 14648468
Alignment:
| Q |
247 |
agcaaattgggcacctacaaatcatacctctagtattac-aactgggatggccatgctgatttttctcatag |
317 |
Q |
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| T |
14648539 |
agcaaattaggcacctacaaatcatacctctagtattacaaactgggttggccaagatgatttttctcatag |
14648468 |
T |
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