View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647-Insertion-2 (Length: 1089)

Name: NF4647-Insertion-2
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647-Insertion-2
NF4647-Insertion-2
[»] chr4 (38 HSPs)
chr4 (8-1071)||(3308721-3309801)
chr4 (716-846)||(32545382-32545512)
chr4 (710-868)||(42758414-42758572)
chr4 (741-913)||(12874836-12875007)
chr4 (710-824)||(47574926-47575042)
chr4 (350-405)||(3227787-3227842)
chr4 (710-824)||(40840602-40840716)
chr4 (710-807)||(13521717-13521814)
chr4 (710-824)||(31298099-31298215)
chr4 (858-953)||(1150944-1151039)
chr4 (854-936)||(5927811-5927892)
chr4 (854-936)||(19540774-19540856)
chr4 (765-936)||(48276254-48276422)
chr4 (713-785)||(55073516-55073588)
chr4 (854-936)||(31766292-31766373)
chr4 (854-939)||(6943201-6943286)
chr4 (710-824)||(41817051-41817167)
chr4 (854-936)||(5271017-5271096)
chr4 (854-936)||(31728985-31729064)
chr4 (854-936)||(37259459-37259538)
chr4 (743-870)||(12878539-12878665)
chr4 (710-824)||(8649342-8649456)
chr4 (710-824)||(8661149-8661263)
chr4 (854-936)||(8694134-8694215)
chr4 (854-936)||(32081720-32081802)
chr4 (854-936)||(31269447-31269525)
chr4 (854-936)||(31273936-31274014)
chr4 (854-936)||(37264159-37264238)
chr4 (854-936)||(51698338-51698421)
chr4 (854-936)||(16421459-16421541)
chr4 (857-935)||(19107033-19107110)
chr4 (741-826)||(43477717-43477802)
chr4 (856-936)||(13065396-13065476)
chr4 (741-785)||(16954605-16954649)
chr4 (857-939)||(12823481-12823563)
chr4 (765-827)||(39216807-39216868)
chr4 (854-939)||(16595615-16595700)
chr4 (854-935)||(42316225-42316305)
[»] chr2 (24 HSPs)
chr2 (710-965)||(13291098-13291353)
chr2 (714-897)||(19094129-19094310)
chr2 (714-907)||(38427067-38427263)
chr2 (715-824)||(19538658-19538769)
chr2 (854-936)||(17968556-17968637)
chr2 (854-936)||(18344844-18344925)
chr2 (710-824)||(10160435-10160551)
chr2 (858-939)||(12797350-12797430)
chr2 (854-939)||(19892063-19892147)
chr2 (710-824)||(35602191-35602307)
chr2 (765-888)||(19592468-19592592)
chr2 (856-936)||(25477890-25477969)
chr2 (856-936)||(25496918-25496997)
chr2 (856-929)||(38591634-38591707)
chr2 (854-936)||(31327171-31327252)
chr2 (854-936)||(1934588-1934667)
chr2 (854-936)||(9185013-9185092)
chr2 (710-785)||(30619135-30619210)
chr2 (502-573)||(19578424-19578495)
chr2 (710-757)||(30629124-30629171)
chr2 (741-824)||(30643421-30643504)
chr2 (856-936)||(9180322-9180399)
chr2 (720-802)||(17453314-17453396)
chr2 (715-773)||(28855277-28855335)
[»] chr8 (22 HSPs)
chr8 (710-882)||(14035706-14035878)
chr8 (710-935)||(17953571-17953795)
chr8 (710-913)||(15875314-15875505)
chr8 (710-824)||(43302398-43302514)
chr8 (854-936)||(15951146-15951228)
chr8 (854-936)||(44925516-44925597)
chr8 (810-914)||(8169601-8169704)
chr8 (710-824)||(4238052-4238167)
chr8 (710-824)||(4242791-4242906)
chr8 (852-953)||(7002068-7002169)
chr8 (710-824)||(31449576-31449691)
chr8 (854-936)||(17020769-17020851)
chr8 (854-936)||(17551206-17551288)
chr8 (741-819)||(34818424-34818502)
chr8 (854-936)||(36684001-36684082)
chr8 (854-935)||(1910551-1910632)
chr8 (854-936)||(1807868-1807947)
chr8 (854-898)||(27415926-27415970)
chr8 (854-949)||(19167065-19167160)
chr8 (854-935)||(33416969-33417047)
chr8 (852-889)||(2966066-2966103)
chr8 (854-935)||(18875984-18876065)
[»] scaffold0184 (1 HSPs)
scaffold0184 (710-841)||(5171-5302)
[»] scaffold0011 (1 HSPs)
scaffold0011 (710-914)||(146046-146251)
[»] chr6 (22 HSPs)
chr6 (710-824)||(24588893-24589009)
chr6 (766-914)||(14573957-14574103)
chr6 (854-936)||(25314048-25314130)
chr6 (854-936)||(26201542-26201624)
chr6 (713-824)||(8748054-8748166)
chr6 (854-939)||(2699686-2699771)
chr6 (858-953)||(20747879-20747974)
chr6 (854-936)||(12689393-12689474)
chr6 (854-936)||(17964152-17964233)
chr6 (710-785)||(15991485-15991559)
chr6 (710-785)||(15999147-15999221)
chr6 (854-936)||(11559812-11559894)
chr6 (854-936)||(11570340-11570422)
chr6 (710-807)||(6112685-6112782)
chr6 (854-935)||(33687244-33687324)
chr6 (718-824)||(15991363-15991468)
chr6 (854-936)||(32001775-32001857)
chr6 (854-949)||(6407444-6407535)
chr6 (710-782)||(2863215-2863287)
chr6 (765-875)||(14575018-14575127)
chr6 (858-936)||(4156949-4157027)
chr6 (854-939)||(19994987-19995071)
[»] chr5 (28 HSPs)
chr5 (710-824)||(3666179-3666295)
chr5 (710-824)||(6155123-6155239)
chr5 (854-939)||(37248393-37248478)
chr5 (710-824)||(12044849-12044965)
chr5 (710-807)||(23977320-23977417)
chr5 (854-939)||(9726345-9726429)
chr5 (854-939)||(40148317-40148401)
chr5 (809-935)||(6513510-6513635)
chr5 (854-936)||(26667694-26667775)
chr5 (854-936)||(26939291-26939372)
chr5 (854-936)||(29167566-29167647)
chr5 (854-936)||(37549745-37549826)
chr5 (710-824)||(556964-557079)
chr5 (710-824)||(32461258-32461374)
chr5 (710-824)||(36937222-36937337)
chr5 (710-824)||(36941976-36942091)
chr5 (710-824)||(41996929-41997044)
chr5 (710-824)||(42001698-42001813)
chr5 (854-936)||(7452176-7452255)
chr5 (856-936)||(36429133-36429212)
chr5 (854-936)||(23757407-23757489)
chr5 (854-936)||(23822863-23822945)
chr5 (854-936)||(36424059-36424140)
chr5 (854-936)||(37652543-37652624)
chr5 (710-824)||(561736-561851)
chr5 (854-939)||(12103447-12103531)
chr5 (710-779)||(7086632-7086702)
chr5 (765-819)||(21323694-21323748)
[»] chr7 (19 HSPs)
chr7 (741-902)||(10498381-10498542)
chr7 (741-902)||(10503410-10503571)
chr7 (710-827)||(4579786-4579904)
chr7 (710-824)||(9008424-9008540)
chr7 (710-824)||(44510382-44510498)
chr7 (710-807)||(9650692-9650789)
chr7 (710-824)||(23866337-23866453)
chr7 (743-898)||(13344884-13345039)
chr7 (710-846)||(23246644-23246772)
chr7 (765-902)||(13337018-13337155)
chr7 (854-936)||(8268713-8268795)
chr7 (710-784)||(19640566-19640640)
chr7 (858-936)||(42626183-42626260)
chr7 (710-935)||(2628912-2629136)
chr7 (710-824)||(8076314-8076430)
chr7 (854-936)||(26341628-26341709)
chr7 (854-935)||(4930643-4930721)
chr7 (854-936)||(6898050-6898132)
chr7 (855-936)||(45748261-45748342)
[»] chr1 (21 HSPs)
chr1 (852-935)||(16649230-16649312)
chr1 (854-939)||(51041101-51041185)
chr1 (854-936)||(26927314-26927395)
chr1 (854-936)||(10135748-10135827)
chr1 (854-936)||(10140516-10140595)
chr1 (710-785)||(18784308-18784383)
chr1 (807-933)||(27311384-27311511)
chr1 (710-824)||(3094357-3094472)
chr1 (854-935)||(47450821-47450902)
chr1 (854-932)||(33300844-33300922)
chr1 (765-869)||(7882316-7882418)
chr1 (854-936)||(25844174-25844253)
chr1 (854-936)||(39200356-39200438)
chr1 (854-935)||(19798596-19798677)
chr1 (710-773)||(33055306-33055370)
chr1 (714-784)||(39037438-39037508)
chr1 (854-936)||(40166408-40166489)
chr1 (741-819)||(8267553-8267633)
chr1 (858-935)||(28434229-28434306)
chr1 (854-939)||(38621125-38621210)
chr1 (854-935)||(39587962-39588043)
[»] scaffold0002 (2 HSPs)
scaffold0002 (710-827)||(140026-140143)
scaffold0002 (854-949)||(443525-443619)
[»] chr3 (26 HSPs)
chr3 (710-824)||(6596067-6596183)
chr3 (710-827)||(13166845-13166962)
chr3 (854-936)||(757960-758042)
chr3 (854-936)||(18467645-18467726)
chr3 (854-936)||(14438293-14438372)
chr3 (804-928)||(18011685-18011809)
chr3 (855-936)||(27709353-27709431)
chr3 (858-937)||(46964433-46964512)
chr3 (854-936)||(29350660-29350741)
chr3 (854-936)||(55326196-55326277)
chr3 (710-824)||(3033911-3034026)
chr3 (710-824)||(3672854-3672969)
chr3 (710-824)||(3692886-3693001)
chr3 (710-824)||(8069946-8070061)
chr3 (710-824)||(8883438-8883553)
chr3 (854-939)||(18472427-18472511)
chr3 (855-936)||(39775321-39775401)
chr3 (710-824)||(8888198-8888313)
chr3 (854-935)||(17025698-17025779)
chr3 (854-936)||(23661059-23661138)
chr3 (854-936)||(23665718-23665797)
chr3 (854-936)||(24037966-24038045)
chr3 (856-935)||(19339727-19339806)
chr3 (851-913)||(49019797-49019858)
chr3 (854-935)||(2207342-2207422)
chr3 (858-907)||(55431739-55431788)
[»] scaffold0008 (1 HSPs)
scaffold0008 (714-824)||(256098-256207)
[»] scaffold0352 (1 HSPs)
scaffold0352 (854-935)||(7526-7606)
[»] scaffold0182 (1 HSPs)
scaffold0182 (710-824)||(9592-9707)
[»] scaffold0009 (1 HSPs)
scaffold0009 (854-953)||(147968-148067)
[»] scaffold0240 (1 HSPs)
scaffold0240 (856-936)||(4395-4474)
[»] scaffold0054 (1 HSPs)
scaffold0054 (854-935)||(25874-25955)
[»] scaffold0690 (1 HSPs)
scaffold0690 (854-901)||(5717-5764)
[»] scaffold0018 (1 HSPs)
scaffold0018 (855-936)||(171364-171444)


Alignment Details
Target: chr4 (Bit Score: 789; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 8 - 1071
Target Start/End: Original strand, 3308721 - 3309801
Alignment:
Q  8 gttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacgttaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3308721 gttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacgttaag 3308820  T
Q  108 gtaacaaaacgatgccgttttggagtatatnnnnnnnnnnnnnnnnttagtttgagtatccaaactcaaactagcatatgttttttatgtatacactccg 207  Q
    ||||||||||||||||||||||||||||||                |||||  ||||||||||||||||| ||||||||||||||||||||||||||  |    
T  3308821 gtaacaaaacgatgccgttttggagtatataaaaaaaattaaaaaattagt--gagtatccaaactcaaagtagcatatgttttttatgtatacactgtg 3308918  T
Q  208 acgagcaaatcataaatcacaaattaaacaactttagtatctggtatctatcatttatctctgac-attaacaatcatcttaattgatatattttctgta 306  Q
    | || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  3308919 aagatcaaatcataaatcacagattaaacaactttagtatctggtatctatcatttatctctgacgattaacaatcatctcaattgatatattttctata 3309018  T
Q  307 tatgtattagcacgttaatgatgttaaacaaagcttaaagtcaaaagtgaaagt------ttgtttgaatgtgcatggaattgcatctgttgacttggca 400  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| ||||||||||||||    
T  3309019 tatgtattagcacgttaacgatgttaaacaaagcttaaagtcaaaagtgaaagtgaaagtttgtttgaatgtgcatggaattgcacctgttgacttggca 3309118  T
Q  401 actgttggtgctggaactgtcgcgtcttaaaagtattgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaatttacaatcaa 500  Q
     |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3309119 gctgttggttctggaattgtcgcgtcttaaaagttttgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaatttacaatcaa 3309218  T
Q  501 gtcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagagacaatcaactaca--------ct 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||    
T  3309219 gtcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagacacaatcaactacattgttgcact 3309318  T
Q  593 ggagctaatcgttcgacaattacacctcaaatatggtactaattggaccactctttttaataccgaagctaatcaaatatgatacacaactctactattg 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3309319 ggagctaatcgttcgacaattacacctcaaatatggtactaattggaccactctttttaataccgaagctaatcaaatatgatacacaactctactattg 3309418  T
Q  693 tattgtgaccactcaaataacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataat 792  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  3309419 tattgtgaccactcaaataacatct-caaatataaatatggtatttcaaccactcaactatggtgctactagtattctaacctctaacttctccaataat 3309517  T
Q  793 cgaagaagaaaatatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaac 892  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3309518 cgaagaagaaaatatttttaagatcattcttaatcatcaaagg-acattataccccaagaaggaatataatcttaaaaatactatttattatgaaggaac 3309616  T
Q  893 ataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcattatatcaagaagggtctaatacccttagaacactct--aatatgt 990  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    | ||||||||||||  | |||||    
T  3309617 ataaattatcgaagggactatgatctgaagatcattcttaattctgaaggatcattatatcaagaagggtctatagtctttagaacactcttaattatgt 3309716  T
Q  991 atatcaaaaagggtttatagtcttaag-acactcttaatctaaatg---acagaaaagaaatggataaaagaaggactcatcaac 1071  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||   | |||||||||||| | ||||||| |||||||||||    
T  3309717 atatcaaaaagggtttatagtcttaagaacactcttaatctaaatggacaaagaaaagaaatgaagaaaagaaagactcatcaac 3309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 716 - 846
Target Start/End: Original strand, 32545382 - 32545512
Alignment:
Q  716 ctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaaga 815  Q
    |||||||||| |||||||||||  |||||||||| ||| || |||| | ||||||||||||||||||||| || || |||||||||| ||||||||||||    
T  32545382 ctccaaatatcaatatggtattctaaccactcaaatatagtactaccaccattctaacctctaacttctcaaagaaccgaagaagaatatatttttaaga 32545481  T
Q  816 tcattcttaattatcaaaggtacattatacc 846  Q
    |||||||||||| ||||||| ||||||||||    
T  32545482 tcattcttaattttcaaagggacattatacc 32545512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 710 - 868
Target Start/End: Complemental strand, 42758572 - 42758414
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||| | ||||||||||||||| ||||||| ||||| ||||| | ||||||||| |||||||||| ||| |||||||||||||  |||||    
T  42758572 taacatctccaaatgtcaatatggtatttcaatcactcaaatatggcgctaccaccattctaacatctaacttcttgaagaatcgaagaagaatttattt 42758473  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaa 868  Q
    |||||||| ||||||||| || |||| ||||||||||  || | |||||||| ||||||    
T  42758472 ttaagatcgttcttaattttcgaagggacattataccgaaaaatggactatggtcttaa 42758414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 741 - 913
Target Start/End: Original strand, 12874836 - 12875007
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacat 840  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||||| || ||| ||| |||||  |||||| |||||||||||||||| ||||||| ||||    
T  12874836 accactcaaatatggtgctaccaccattctaacatctaacttctccaagaatggaacaagaatgtatttt-aagatcattcttaattttcaaaggaacat 12874934  T
Q  841 tataccccaagaaggactatgatcttaaaaatactatttattatgaaggaaca-taaattatcgaagggactat 913  Q
    ||||||  || | ||| ||||||||| |||||| ||||||||  ||||| |||  ||| |||||||||||||||    
T  12874935 tataccgaaaaagggattatgatctt-aaaatattatttatttcgaagggacacaaaaatatcgaagggactat 12875007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 47574926 - 47575042
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  47574926 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgttacgaccattctaacatctaacttctccatgaattgaagaagaatatatat 47575025  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  47575026 gtttaagatcattctta 47575042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 3227842 - 3227787
Alignment:
Q  350 aaagtgaaagtttgtttgaatgtgcatggaattgcatctgttgacttggcaactgt 405  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3227842 aaagtgaaagttcgtttgaatgtgcatggaattgcatctgttgacttggcaactgt 3227787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 40840602 - 40840716
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||||| ||| |  |||||||||||||||| |||| |||||| | ||||||||| ||||||||||| || ||| |||||| || |||||     
T  40840602 taacatctccaaatatcaatgtaatatttcaaccactcaaatatgatgctacaaccattctaacatctaacttctctaagaattgaagaaaaatatattg 40840701  T
Q  810 ttaagatcattctta 824  Q
    |||| ||||||||||    
T  40840702 ttaaaatcattctta 40840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 807
Target Start/End: Complemental strand, 13521814 - 13521717
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||  || ||| ||||||||| ||||    
T  13521814 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgttacgaccattctaacatctaacttcttcaagaattgaagaagaatatat 13521717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 31298215 - 31298099
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||| ||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  ||| || |||||  | ||||    
T  31298215 taacttctccaaatatcaatatggtacttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgaatagatgaagaatatatat 31298116  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  31298115 gtttaagatcattctta 31298099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 858 - 953
Target Start/End: Complemental strand, 1151039 - 1150944
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcattatatc 953  Q
    ||||||||||||| |||| ||||||| ||||| |||||||||||| ||||||||||| | | ||||||||||||||||| || ||  |||||||||    
T  1151039 tatgatcttaaaagtactctttattacgaaggtacataaattatcaaagggactatgctcttaagatcattcttaattccgaagggacattatatc 1150944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 5927892 - 5927811
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  5927892 ggactatgatcttaaaagtactctttattttgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattc 5927811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 19540856 - 19540774
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  19540856 ggactatgatcttaaaagtactctttattccgaagggacatatattatcgaagggactatgtttttaagaccattcttaattc 19540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 765 - 936
Target Start/End: Complemental strand, 48276422 - 48276254
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatc 864  Q
    ||||||||| ||||||||||  || ||||||||||||| ||||||| |||||||||| ||||| | || || |||||| |||  || | |||||||||||    
T  48276422 cattctaacatctaacttcttcaagaatcgaagaagaatatatttt-aagatcattcataattttgaaggg-acattacaccgaaaaagggactatgatc 48276325  T
Q  865 ttaaaaatactatttattatgaaggaacataaat-tatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||  || ||||||||  |||||| ||||||  ||||||||||||||||| || |||| ||||||||||||    
T  48276324 ttaaat-tattatttattccgaagga-cataaaaatatcgaagggactatgaatttaagaccattcttaattc 48276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 713 - 785
Target Start/End: Original strand, 55073516 - 55073588
Alignment:
Q  713 catctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctc 785  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||| | ||||||||| | |||||||||    
T  55073516 catctccaaatataaatgtggtatttcaacctctcaaatatggtgctaccaccattctaacatataacttctc 55073588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 31766292 - 31766373
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||| |||||||||| ||| |||| ||||||||||||    
T  31766292 ggactatgatcttaaaagtactttttattctgaagggacatatattatcgcagggactatg-ttttaagaccattcttaattc 31766373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 939
Target Start/End: Original strand, 6943201 - 6943286
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    |||||||||||||||||||||||||||||  ||| | ||||| |||||||||| ||||||  ||| |||| | |||||||||||||    
T  6943201 ggactatgatcttaaaaatactatttattccgaatggacatatattatcgaagagactatttttttaagacctttcttaattctga 6943286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 41817051 - 41817167
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||| ||| ||||||||| ||||||||||||| ||||||||||| | ||||||||  || |||||||| |  ||| ||||||||  | ||||    
T  41817051 taacttctccaagtatcaatatggtacttcaaccactcaaatatggtgctacaaccattctaatatcaaacttctccatgaatagaagaagaatatatat 41817150  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  41817151 gtttaagatcattctta 41817167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 5271096 - 5271017
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  5271096 ggactatgatcttaaaagtactctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 5271017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 31729064 - 31728985
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  31729064 ggactatgatcttaaaagtactttttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 31728985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 37259538 - 37259459
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||||||||||||||||| | |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  37259538 ggactatgatcttaaaaatattctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 37259459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 743 - 870
Target Start/End: Original strand, 12878539 - 12878665
Alignment:
Q  743 cactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacatta 842  Q
    ||||||| |||||||| || | ||||||||| | ||||||||| || ||| |||||||||  |||||| |||||||||||||||| |  |||| ||||||    
T  12878539 cactcaaatatggtgccaccaccattctaacatgtaacttctccaagaattgaagaagaatgtatttt-aagatcattcttaatttttgaagggacatta 12878637  T
Q  843 taccccaagaaggactatgatcttaaaa 870  Q
    |||   || | |||||||||||||||||    
T  12878638 tactgaaaaagggactatgatcttaaaa 12878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 8649456 - 8649342
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| || ||  | ||||||||| | |||  ||   || ||| |||||| || || |||    
T  8649456 taacatctccaaatatcaatatgatatttcaaccactcaactatgatgttatcaccattctaacatataagatcatcaagaattgaagaaaaatatgttt 8649357  T
Q  810 ttaagatcattctta 824  Q
    |||||||||||||||    
T  8649356 ttaagatcattctta 8649342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 8661263 - 8661149
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| || ||  | ||||||||| | |||  ||   || ||| |||||| || || |||    
T  8661263 taacatctccaaatatcaatatgatatttcaaccactcaactatgatgttatcaccattctaacatataagatcatcaagaattgaagaaaaatatgttt 8661164  T
Q  810 ttaagatcattctta 824  Q
    |||||||||||||||    
T  8661163 ttaagatcattctta 8661149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 8694134 - 8694215
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| | |||| ||||| ||||||||| |||||||| ||| |||| ||||||||||||    
T  8694134 ggactatgatcttaaaagtactctttattctaaagggacatatattatcgaatggactatg-ttttaagaccattcttaattc 8694215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 32081802 - 32081720
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| | |||| ||||||  ||||| || || |||||||||||||||||| ||| |||| ||||||||||||    
T  32081802 ggactatgatcttaatagtactctttattccgaagggacttatattatcgaagggactatgtttttaagaccattcttaattc 32081720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 31269447 - 31269525
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  31269447 ggactatgatcttaaaagtactctttattctgaagggacat---ttatcgaagggactatg-ttttaagaccattcttaattc 31269525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 31273936 - 31274014
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  31273936 ggactatgatcttaaaagtactctttattctgaagggacat---ttatcgaagggactatg-ttttaagaccattcttaattc 31274014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 37264238 - 37264159
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  37264238 ggactatgatcttaaaagtattctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 37264159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 51698338 - 51698421
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaa-ggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||| |||||||||| ||||  ||||| |||| || ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  51698338 ggactacgatcttaaaagtactcattattctgaatgggacatatattatcgaagggactatgtttttaagaccattcttaattc 51698421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 16421459 - 16421541
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| | |||| ||||||   |||| || || |||||||||||||||||| ||| |||| ||||||||||||    
T  16421459 ggactatgatcttaatagtactctttattccaaagggacttatattatcgaagggactatgtttttaagaccattcttaattc 16421541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 857 - 935
Target Start/End: Original strand, 19107033 - 19107110
Alignment:
Q  857 ctatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    |||||||||||||| |||| ||||||  ||||  ||||| |||||||||||||||||| ||| |||| |||||||||||    
T  19107033 ctatgatcttaaaagtactctttattccgaagagacatatattatcgaagggactatg-ttttaagaccattcttaatt 19107110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 741 - 826
Target Start/End: Complemental strand, 43477802 - 43477717
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaat 826  Q
    |||| |||| ||||||| ||||| |  |||||| | |||| |||| || ||| ||||||||| |||||||||||||||||||||||    
T  43477802 accattcaaatatggtgttactatcgatctaacttttaacatctccaagaattgaagaagaatatatttttaagatcattcttaat 43477717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 856 - 936
Target Start/End: Complemental strand, 13065476 - 13065396
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| |  ||||||||  ||||| ||||| |||||||||||| ||||| ||| |||| | ||||||||||    
T  13065476 actatgatcttaaaagtcatatttatttcgaagggacatacattatcgaaggggctatgtttttaagacctttcttaattc 13065396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 785
Target Start/End: Original strand, 16954605 - 16954649
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctc 785  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||    
T  16954605 accactcaaatatggtgctaccaccattctaacctctaacttctc 16954649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 857 - 939
Target Start/End: Complemental strand, 12823563 - 12823481
Alignment:
Q  857 ctatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    |||||||||||| |||||| ||||||  ||| | || || ||||||||| |||||||| ||| |||| |||| ||||||||||    
T  12823563 ctatgatcttaataatactctttattccgaaaggacttatattatcgaatggactatgtttttaagaccatttttaattctga 12823481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 765 - 827
Target Start/End: Complemental strand, 39216868 - 39216807
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaatt 827  Q
    ||||||||  ||||||||||| || ||||||||||||| ||| |||||||||||||| |||||    
T  39216868 cattctaatatctaacttctccaagaatcgaagaagaatata-ttttaagatcattcataatt 39216807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 16595700 - 16595615
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    |||||||||||||||||||||| ||  || |||||| ||| |  ||| | ||||||||||| | | |||| |||||||||||||||    
T  16595700 ggactatgatcttaaaaatactcttatttctgaagggacaaattttacctaagggactatgttcttaagaccattcttaattctga 16595615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 42316305 - 42316225
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| || ||||||| ||||||| |||||||| || ||| |||||||  | | |||| |||||||||||    
T  42316305 ggactatgatcttaaaa-tattatttatcatgaagggacataaataattgaacggactatactcttaagaccattcttaatt 42316225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 1e-53; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 710 - 965
Target Start/End: Complemental strand, 13291353 - 13291098
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||| | ||| ||| ||||||||||||||||||| ||||| | ||| |  |||||||||||||||||||| || ||||||| || || ||||||    
T  13291353 taacatctcctagtattaatttggtatttcaaccactcaaatatggggttaccactattctaacctctaacttctccaagaatcgaaaaataatatattt 13291254  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaaggga 909  Q
    |||||||||||||||||| || |||| |||||||||| ||| ||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  13291253 ttaagatcattcttaattttcgaagggacattatacctcaaaaagaactatgatcttaaaaatactatttattcttaagggacataaattatcgaaggga 13291154  T
Q  910 ctatgatttgaagatcattcttaattctgagggatcattatatcaagaagggtcta 965  Q
     |||  | | |||| |||| | ||||| || ||  ||||||||| |||||||||||    
T  13291153 ttatactcttaagaccattgtcaattccgaagggacattatatctagaagggtcta 13291098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 714 - 897
Target Start/End: Complemental strand, 19094310 - 19094129
Alignment:
Q  714 atctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaa 813  Q
    |||||||||| | ||||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||||||||  ||||| |||    
T  19094310 atctccaaatgtcaatatggtatttcaatcactcaaatatggtgctaccaccattctaacatctaacttctcgaagaatcgaagaagaatttatttgtaa 19094211  T
Q  814 gatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaa 897  Q
    |||||||||||||| || ||||  ||||||| || || | ||| ||||||||| |||||| |||||||| |||| | |||||||    
T  19094210 gatcattcttaattttcgaaggggcattata-ccgaaaatggattatgatctt-aaaatattatttattctgaaaggacataaa 19094129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 714 - 907
Target Start/End: Complemental strand, 38427263 - 38427067
Alignment:
Q  714 atctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaa 813  Q
    |||| ||| ||| |||||| ||||||| |||||| | ||||||||||| | |||||||||||||| ||||||  | ||||||| ||||| ||||  ||||    
T  38427263 atcttcaagtatcaatatgatatttcagccactctaatatggtgctaccaccattctaacctctaccttctcccagaatcgaataagaatatatccttaa 38427164  T
Q  814 gatcattcttaattatcaaaggtacattataccccaa---gaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagg 907  Q
    |||||||||||||| || |||  ||||||||   |||   ||| ||||||||||||||||||| ||||||||  ||||| |||||||||||||||||    
T  38427163 gatcattcttaattttcgaagagacattatatttcaaaaggaacgactatgatcttaaaaatattatttatttcgaagggacataaattatcgaagg 38427067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 715 - 824
Target Start/End: Original strand, 19538658 - 19538769
Alignment:
Q  715 tctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatattttta 812  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| |||| |||||| |  ||| ||||||||  | |||| ||||    
T  19538658 tctccaaatatcaatatggtatttcaaccactcaaatatggtgctacgaccattctaacatctatcttctccatgaattgaagaagaatatatatgttta 19538757  T
Q  813 agatcattctta 824  Q
    ||||||||||||    
T  19538758 agatcattctta 19538769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 17968637 - 17968556
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  17968637 ggactatgatcttaaaagtactctttattttgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattc 17968556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 18344844 - 18344925
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||| ||| |||| ||||||| ||||    
T  18344844 ggactatgatcttaaaagtactatttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttcattc 18344925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 10160551 - 10160435
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||||||||||||||| |||||| ||||||| ||| | || |||||| ||||||||||| |  ||| ||||||||  | ||||    
T  10160551 taacttctccaaatatcaatatggtatttcaactactcaaatatggtgttacgaccagtctaacatctaacttctccatgaattgaagaagaatatatat 10160452  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  10160451 gtttaagatcattctta 10160435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 858 - 939
Target Start/End: Original strand, 12797350 - 12797430
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  12797350 tatgatcttaaaagtactctttattctgaagggacatatattatcgaagggactatg-ttttaagagcattcttaattctga 12797430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 19892147 - 19892063
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||||| |||||||| ||| |||| |||||||||||||||    
T  19892147 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaatggactatg-ttttaagaccattcttaattctga 19892063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 35602191 - 35602307
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||||| ||  | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  35602191 taacttctccaaataccaatatggtatttcaaccactcaaatatggtgttaaaaccattctaacatctaacttctccatgaattgaagaagaatatatat 35602290  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  35602291 gtttaagatcattctta 35602307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 765 - 888
Target Start/End: Original strand, 19592468 - 19592592
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaaatattttt-aagatcattcttaattatcaaaggtacattataccccaagaaggactatgat 863  Q
    ||||||||||||||||||||| || |||||||||| || |||||||| |||||||||||||||  || || | |||||||||| | | | | ||| ||||    
T  19592468 cattctaacctctaacttctccaagaatcgaagaataatatatttttgaagatcattcttaatattcgaaaggacattatacctctaaaggtactgtgat 19592567  T
Q  864 cttaaaaatactatttattatgaag 888  Q
    |||||| ||||| |||||| |||||    
T  19592568 cttaaagatactctttattttgaag 19592592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 856 - 936
Target Start/End: Complemental strand, 25477969 - 25477890
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  25477969 actatgatcttaaaagtactctttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattc 25477890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 856 - 936
Target Start/End: Complemental strand, 25496997 - 25496918
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  25496997 actatgatcttaaaagtactctttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattc 25496918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 856 - 929
Target Start/End: Original strand, 38591634 - 38591707
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattc 929  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||| || |||||||| ||| ||||||||||    
T  38591634 actatgatcttaaaaatactctttattacaaagggacataaattatcaaatggactatgtttttaagatcattc 38591707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 31327171 - 31327252
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| ||||||||||| |||||| ||| |||| ||||||||||||    
T  31327171 ggactatgatcttaaaagtactttttatttcgaagggacatatattatcgaaggaactatg-ttttaagaccattcttaattc 31327252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 1934667 - 1934588
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  1934667 ggactatgatcttaaaagtattctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 1934588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 9185092 - 9185013
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||  |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  9185092 ggactatgatcttaaaagtactctttatcctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 9185013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 710 - 785
Target Start/End: Original strand, 30619135 - 30619210
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctc 785  Q
    |||||| || |||||| ||||||||||||||||||||||| ||||||| ||| | ||| ||||| | |||||||||    
T  30619135 taacatatcaaaatatcaatatggtatttcaaccactcaaatatggtgttaccaccatgctaacgtgtaacttctc 30619210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 19578495 - 19578424
Alignment:
Q  502 tcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctcca 573  Q
    ||||||||||||||| |||||||||||| |  ||||||| ||||||| |||  || ||||||| ||||||||    
T  19578495 tcgctctctttaagacgttttgtggcactacctaaaattgtgcaaggaagactatcaaccatgctgcctcca 19578424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 710 - 757
Target Start/End: Original strand, 30629124 - 30629171
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtg 757  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||||    
T  30629124 taacatctcaaaataccaatatggtatttcaaccactcaaatatggtg 30629171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 741 - 824
Target Start/End: Original strand, 30643421 - 30643504
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattctta 824  Q
    ||||||||| |||| || ||| | ||||||||| ||| ||||||| |  ||| ||||||||| |||| ||||||||||||||||    
T  30643421 accactcaaatatgatgttaccaccattctaacatctgacttctccatgaattgaagaagaatatatgtttaagatcattctta 30643504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 856 - 936
Target Start/End: Complemental strand, 9180399 - 9180322
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| |||| |||||  |||||| ||||   ||||||||||||||||  ||| |||| ||||||||||||    
T  9180399 actatgatcttaaaagtactctttatcctgaagggacat---ttatcgaagggactatttttttaagaccattcttaattc 9180322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 720 - 802
Target Start/End: Complemental strand, 17453396 - 17453314
Alignment:
Q  720 aaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaa 802  Q
    |||||| |||||  |||||||||||||||| ||||||| ||| | ||||||||  ||||||||||| || | | |||||||||    
T  17453396 aaatatcaatataatatttcaaccactcaaatatggtgatacgaccattctaatatctaacttctccaagatttgaagaagaa 17453314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 715 - 773
Target Start/End: Original strand, 28855277 - 28855335
Alignment:
Q  715 tctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaac 773  Q
    |||| |||||| ||||||||| ||||||||||||| ||||||| ||| | |||||||||    
T  28855277 tctcaaaatatcaatatggtacttcaaccactcaaatatggtgttacgaccattctaac 28855335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 6e-40; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 710 - 882
Target Start/End: Original strand, 14035706 - 14035878
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||  | ||||||||| || |||||||||  || |||||     
T  14035706 taacatctccaaatatcaatatggtatttcaaccgctcaaatatggtgctaccaccattctaatatttaacttctctaagaatcgaagacaaatatatta 14035805  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttatt 882  Q
    |||||||||||||||||| ||||||| |  ||||||| ||  |||||||||||||||||||||||| ||||||    
T  14035806 ttaagatcattcttaattttcaaagggatgttatacctcagaaaggactatgatcttaaaaatactctttatt 14035878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 710 - 935
Target Start/End: Complemental strand, 17953795 - 17953571
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||| | |||||||||||| |||||||||| ||| ||||||| | ||||||||| |||||||||||||| |||||||||| ||  |||||    
T  17953795 taacatctccaaatgtcaatatggtatttgaaccactcaaatattgtgctaccaccattctaacatctaacttctcgaagaatcgaagaaaaatttattt 17953696  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacat-aaattatcgaaggg 908  Q
    ||||| |||||||||||| || |||| ||||| || || || | | |||||||| || |||||| |||||||| | |||| |||| ||| ||||||||||    
T  17953695 ttaaggtcattcttaattttcgaagggacattgta-ccgaaaaggaactatgatgtt-aaaatattatttattcttaagggacataaaaatatcgaaggg 17953598  T
Q  909 actatgatttgaagatcattcttaatt 935  Q
    |||||| | | |||| |||||||||||    
T  17953597 actatgctcttaagaccattcttaatt 17953571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 710 - 913
Target Start/End: Complemental strand, 15875505 - 15875314
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||| ||||| | |||||||||||||||| |||||| |||||||| || | ||||||||| |||||||||||           ||||||  |||||    
T  15875505 taacatcttcaaatgtcaatatggtatttcaactactcaaatatggtgccaccaccattctaacatctaacttctc-----------gaagaatttattt 15875417  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacat-aaattatcgaaggg 908  Q
    |||||||||||||||||| || |||| ||||| || || || | ||||||||||||| |||||| |||||||| |||||| |||| ||| |||| |||||    
T  15875416 ttaagatcattcttaattttcgaagggacatttta-ccgaaaagggactatgatctt-aaaatattatttattctgaagggacataaaaatatcaaaggg 15875319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 43302514 - 43302398
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||| || ||| | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  43302514 taacttctccaaatatcaatatggtatttcaaccactcaaatatgatgttacgaccattctaacatctaacttctccatgaattgaagaagaatatatat 43302415  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  43302414 gtttaagatcattctta 43302398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 15951228 - 15951146
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||| ||||||||||| ||| |||| ||||||||||||    
T  15951228 ggactatgatcttaaaagtactctttattctgaagggacatatattatcaaagggactatgttttaaagaccattcttaattc 15951146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 44925597 - 44925516
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||| ||||| ||| |||| ||||||||||||    
T  44925597 ggactatgatcttaaaagtactatttattctgaagggacatatattatcgaaggggctatg-ttttaagaccattcttaattc 44925516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 810 - 914
Target Start/End: Original strand, 8169601 - 8169704
Alignment:
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaaggga 909  Q
    ||||||||||||||| || | || || |||||||||| ||||| |||||||||||||||||||| | ||||||   |||| ||||||||| ||||| |||    
T  8169601 ttaagatcattcttatttttgaaggg-acattatacctcaagagggactatgatcttaaaaatattttttatttgaaaggtacataaattgtcgaatgga 8169699  T
Q  910 ctatg 914  Q
    |||||    
T  8169700 ctatg 8169704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 4238167 - 4238052
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||| ||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  4238167 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgttacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 4238069  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  4238068 gtttaagatcattctta 4238052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 4242906 - 4242791
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||| ||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  4242906 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgttacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 4242808  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  4242807 gtttaagatcattctta 4242791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 852 - 953
Target Start/End: Original strand, 7002068 - 7002169
Alignment:
Q  852 aaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcattata 951  Q
    |||||||||||||||||||||| | ||||||   |||| |||||||||||| |||||||||||   | |||||||||||| |||| || ||| | |||||    
T  7002068 aaggactatgatcttaaaaatattttttattccaaagggacataaattatcaaagggactatgcccttaagatcattcttgattccgaaggaacgttata 7002167  T
Q  952 tc 953  Q
    ||    
T  7002168 tc 7002169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 31449691 - 31449576
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | |||| |||| ||||||||||| |  | | ||||||||| |||| |    
T  31449691 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattttaacatctaacttctccatgagttgaagaagaatatatat 31449593  T
Q  810 --ttaagatcattctta 824  Q
      |||||||||||||||    
T  31449592 gcttaagatcattctta 31449576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 17020769 - 17020851
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||| |||||||||| | |||| |||||| ||||||  | || |||||||||||||||||| ||| |||| ||||||||||||    
T  17020769 ggacaatgatcttaatagtactctttattttgaaggggcttatattatcgaagggactatgtttttaagaccattcttaattc 17020851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 17551206 - 17551288
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||| |||||||||| | |||| |||||| ||||||  | || |||||||||||||||||| ||| |||| ||||||||||||    
T  17551206 ggacaatgatcttaatagtactctttattttgaaggggcttatattatcgaagggactatgtttttaagaccattcttaattc 17551288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 741 - 819
Target Start/End: Complemental strand, 34818502 - 34818424
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcat 819  Q
    ||||||||| ||||||  ||||| ||||||||| ||||||||||| || ||| ||||||| | |||| |||||||||||    
T  34818502 accactcaaatatggtattactaccattctaacatctaacttctccaagaattgaagaagtatatatatttaagatcat 34818424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 36684001 - 36684082
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| | ||||||| |||||||| ||| |||| || |||||||||    
T  36684001 ggactatgatcttaaaagtactctttattctgaagggacatataatatcgaatggactatg-ttttaagaccactcttaattc 36684082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 1910632 - 1910551
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||| | |||| ||||||  ||||| || || ||||||||| |||||||| ||| |||| |||||||||||    
T  1910632 ggactatgatcttaatagtactctttatttcgaagggacttatattatcgaatggactatgtttttaagaccattcttaatt 1910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 1807868 - 1807947
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||   ||||||||||||| ||| ||| |||| ||||||||||||    
T  1807868 ggactatgatcttaaaagtaatctttattctgaagggacat---ttatcgaagggacaatgtttttaagaccattcttaattc 1807947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 854 - 898
Target Start/End: Original strand, 27415926 - 27415970
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaat 898  Q
    ||||||||||||||||| |||||||| || |||||||||||||||    
T  27415926 ggactatgatcttaaaagtactatttgttctgaaggaacataaat 27415970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 854 - 949
Target Start/End: Original strand, 19167065 - 19167160
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcatta 949  Q
    ||||||||||||||| | |||| ||||||  ||||| || || ||||||||| | |||||| ||| |||| |||||||||||| || || ||||||    
T  19167065 ggactatgatcttaatagtactctttattccgaagggacttatattatcgaatgaactatgttttaaagaccattcttaattccgaagggtcatta 19167160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 854 - 935
Target Start/End: Original strand, 33416969 - 33417047
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| |||| |||||| ||| |  ||||   ||||||||||||||||| ||| |||| |||||||||||    
T  33416969 ggactatgatcttaaaagtactctttattctgaggagacat---ttatcgaagggactatgtttttaagaccattcttaatt 33417047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 889
Target Start/End: Original strand, 2966066 - 2966103
Alignment:
Q  852 aaggactatgatcttaaaaatactatttattatgaagg 889  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  2966066 aaggactatgatcttaaaaatactttttattctgaagg 2966103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 18876065 - 18875984
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||| | |||| ||||||  ||||| || || ||||||| || ||||||| ||| |||| |||||||||||    
T  18876065 ggactatgatcttaatattactctttattccgaagggacttatattatcggagtgactatgtttttaagaccattcttaatt 18875984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 710 - 841
Target Start/End: Original strand, 5171 - 5302
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||| ||||  | ||||||||||||||| ||||||| | |||||||| || ||||||||| ||||||||||  ||||||||||||||||  |||||    
T  5171 taacatcttcaaacctcaatatggtatttcaaacactcaaatttggtgctaataccattctaacatctaacttctttaataatcgaagaagaatttattt 5270  T
Q  810 ttaagatcattcttaattatcaaaggtacatt 841  Q
    |||||||||||||||||| || |||| |||||    
T  5271 ttaagatcattcttaattttcgaagggacatt 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 710 - 914
Target Start/End: Complemental strand, 146251 - 146046
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||| | |||| |||| | ||||||||||| ||||||||||| | |||| |||| |||||||||||||| ||| |||||||||  |||||    
T  146251 taacatctccaaatgtcaataaggtagtacaaccactcaaatatggtgctaccaccattttaacatctaacttctcgaaaaattgaagaagaatttattt 146152  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaag-gactatgatcttaaaaatactatttattatgaaggaacat-aaattatcgaagg 907  Q
    ||||||||| ||||  || || |||| ||||||||||  || ||| | |||||||||| |||||| ||| |||| |||| | |||| ||| |||||||||    
T  146151 ttaagatcactcttctttttcgaagggacattataccgaaaaaagaggctatgatctt-aaaatattatatattctgaaaggacataaaaatatcgaagg 146053  T
Q  908 gactatg 914  Q
    |||||||    
T  146052 gactatg 146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 24589009 - 24588893
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  24589009 taacatctccaaatatcaatatggtatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgaattgaagaagaatatatat 24588910  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  24588909 gtttaagatcattctta 24588893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 766 - 914
Target Start/End: Original strand, 14573957 - 14574103
Alignment:
Q  766 attctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatct 865  Q
    |||||||||||||| ||||| || |||| ||| | || |||||||||||||||||||||||| ||||| | |||||||||| |||   ||| ||||||||    
T  14573957 attctaacctctaaattctccaaaaatcaaagga-aatatatttttaagatcattcttaatt-tcaaaaggacattatacctcaaatgggattatgatct 14574054  T
Q  866 taaaaatactatttattatgaaggaacataaattatcgaagggactatg 914  Q
    ||||| |||| ||||||  ||| ||||||||||| || |||||||||||    
T  14574055 taaaactactctttatttcgaatgaacataaattctctaagggactatg 14574103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 25314130 - 25314048
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||||| |||||||| ||| |||||||||||||||||    
T  25314130 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaaaggactatgtttttaagatcattcttaattc 25314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 26201624 - 26201542
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||||| |||||||| ||| |||||||||||||||||    
T  26201624 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaaaggactatgtttttaagatcattcttaattc 26201542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 713 - 824
Target Start/End: Original strand, 8748054 - 8748166
Alignment:
Q  713 catctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatat---tt 809  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||| | || |||||| |||||||| || || ||| ||||||||| ||||   ||    
T  8748054 catctccaaatatcaatatggtatttcaaccactcaaatatggtgctacgacca-tctaacatctaacttttc-aagaattgaagaagaatatatatgtt 8748151  T
Q  810 ttaagatcattctta 824  Q
    |||||||||||||||    
T  8748152 ttaagatcattctta 8748166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 2699771 - 2699686
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||| | |||| ||||||  |||||||| || |||||||||||||||||| ||| ||||| ||||||||||||||    
T  2699771 ggactatgatcttaatagtactctttattccgaaggaacttatattatcgaagggactatgtttttaagattattcttaattctga 2699686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 858 - 953
Target Start/End: Complemental strand, 20747974 - 20747879
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcattatatc 953  Q
    |||||||||||||||| | ||||||  ||||| ||||| |||||| ||||||||||| ||| ||||||||||||||||| || ||  |||||||||    
T  20747974 tatgatcttaaaaatattctttattccgaagggacatatattatcaaagggactatgtttttaagatcattcttaattccgaagggacattatatc 20747879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 12689393 - 12689474
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| ||||||||||| |||||  ||||| ||||| |||||||||||| ||| |||| ||||||||||||    
T  12689393 ggactatgatcttaaaagtactatttattctgaagagacatatattattgaagggactatg-ttttaagaccattcttaattc 12689474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 17964233 - 17964152
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||| | ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  17964233 ggactatgatcttaaaagtactctttattttgaatggacatatattatcgaagggactatg-ttttaagaccattcttaattc 17964152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 710 - 785
Target Start/End: Complemental strand, 15991559 - 15991485
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctc 785  Q
    |||||||||||||| | |||||||||||| ||||||| || ||||||||||| | ||||||||| |||||||||||    
T  15991559 taacatctccaaatgtcaatatggtattt-aaccacttaaatatggtgctacgatcattctaacttctaacttctc 15991485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 710 - 785
Target Start/End: Complemental strand, 15999221 - 15999147
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctc 785  Q
    |||||||||||||| | |||||||||||| ||||||| || ||||||||||| | ||||||||| |||||||||||    
T  15999221 taacatctccaaatgtcaatatggtattt-aaccacttaaatatggtgctacgatcattctaacttctaacttctc 15999147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 11559894 - 11559812
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| |||||| || |||||||| ||| |||| ||||||||||||    
T  11559894 ggactatgatcttaaaagtactctttattccgaagggacatatattatcaaatggactatgtttttaagaccattcttaattc 11559812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 11570422 - 11570340
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||| |  ||||| ||||| ||||||||| |||||||| ||| |||| ||||||||||||    
T  11570422 ggactatgatcttaaaagtactctttaatccgaagggacatatattatcgaatggactatgtttttaagaccattcttaattc 11570340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 807
Target Start/End: Complemental strand, 6112782 - 6112685
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatat 807  Q
    |||| ||||||||||| ||||||||| ||||| || |||| ||| ||||||| | ||||||||| ||||||||||| |  ||| ||||||||| ||||    
T  6112782 taacttctccaaatatcaatatggtacttcaagcattcaaatatagtgctacgaccattctaacatctaacttctccatgaatagaagaagaatatat 6112685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 33687324 - 33687244
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| |||| ||||||  ||||||||||| |||||||||| ||||||| ||| |||| ||| |||||||    
T  33687324 ggactatgatcttaaaagtactctttattccgaaggaacatatattatcgaagagactatg-ttttaagaccatacttaatt 33687244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 824
Target Start/End: Complemental strand, 15991468 - 15991363
Alignment:
Q  718 ccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatc 817  Q
    |||||| | |||||||||||| ||||||| || |||||||||||   ||||||||| ||||||||||| |  ||| || |||||| ||| || |||||||    
T  15991468 ccaaatgtcaatatggtattt-aaccacttaaatatggtgctacggtcattctaacatctaacttctctagaaattgatgaagaatatacttctaagatc 15991370  T
Q  818 attctta 824  Q
    |||||||    
T  15991369 attctta 15991363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 32001857 - 32001775
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||| ||||||||||| ||||| |||||  | ||||||||||||||| |||||| | | | || ||||||||||||    
T  32001857 ggactatgatcgtaaaaatactaattattttgaagagatataaattatcgaaggaactatgttcttacgaccattcttaattc 32001775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 854 - 949
Target Start/End: Complemental strand, 6407535 - 6407444
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcatta 949  Q
    ||||||||||||||||| |||| |||||| |||||| ||||   ||||| ||||||||||| ||| |||| |||||||||||| || ||| |||||    
T  6407535 ggactatgatcttaaaagtactctttattctgaagggacat---ttatc-aagggactatgtttttaagaccattcttaattccgaaggaacatta 6407444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 710 - 782
Target Start/End: Complemental strand, 2863287 - 2863215
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaactt 782  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||||||| ||  | ||||||||| | ||||||    
T  2863287 taacatctccaaatatcaatatgaaatttcaaccactcaaatatggtgttatcaccattctaacatataactt 2863215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 765 - 875
Target Start/End: Original strand, 14575018 - 14575127
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaa-atatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgat 863  Q
    |||||||||||||||||| || || |||   |||||||| ||| | ||||||||||||| ||||  | |||| |||||||||| ||| | ||||||||||    
T  14575018 cattctaacctctaacttttccaa-aatatcagaagaaatatactcttaagatcattctaaattc-cgaagggacattatacctcaaaagggactatgat 14575115  T
Q  864 cttaaaaatact 875  Q
    ||||||||||||    
T  14575116 cttaaaaatact 14575127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 858 - 936
Target Start/End: Complemental strand, 4157027 - 4156949
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||| |||||| ||||||  ||||| || || ||||| |||| ||||||| ||| |||| ||||||||||||    
T  4157027 tatgatcttaataatactctttattccgaagggacttatattattgaagtgactatgtttttaagaccattcttaattc 4156949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 19995071 - 19994987
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||| ||||  |||| |||||| |||||| ||||| ||||| |||||||||||| ||| || | | |||||||||||||    
T  19995071 ggactatgatcctaaag-tactctttattctgaagggacatacattatagaagggactatgtttttaaaacctttcttaattctga 19994987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 3666179 - 3666295
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| || ||| ||||||||  | ||||    
T  3666179 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgctacaaccattctaacatctaacttctccaagaatggaagaagaatatatat 3666278  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  3666279 gtttaagatcattctta 3666295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 6155239 - 6155123
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  6155239 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgaattgaagaagaatatatat 6155140  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  6155139 gtttaagatcattctta 6155123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 37248478 - 37248393
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  37248478 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaagggactatgtttttaagatcattcttaattctga 37248393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 12044965 - 12044849
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  12044965 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgttacgaccattctaacatctaacttctccatgaattgaagaagaatatatat 12044866  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  12044865 gtttaagatcattctta 12044849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 807
Target Start/End: Complemental strand, 23977417 - 23977320
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatat 807  Q
    |||| ||||||||||| ||||||||| ||||||||||||| ||||||||||| | ||||||||| | ||||||||| |  ||| ||||||||||||||    
T  23977417 taacttctccaaatatcaatatggtacttcaaccactcaaatatggtgctacgaccattctaacatttaacttctctatgaatagaagaagaaaatat 23977320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 9726429 - 9726345
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  9726429 ggactatgatcttaaaagtactctttattccgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattctga 9726345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 854 - 939
Target Start/End: Original strand, 40148317 - 40148401
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    |||| |||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  40148317 ggacaatgatcttaaaagtactttttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattctga 40148401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 809 - 935
Target Start/End: Complemental strand, 6513635 - 6513510
Alignment:
Q  809 tttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaaggg 908  Q
    ||||||||||||||||||||| |  || ||||||||  |||| | ||||||||||||||| |  ||| ||||||  ||||| || || ||||||| ||||    
T  6513635 tttaagatcattcttaattatgacggg-acattatattccaaaagggactatgatcttaatagcactctttattccgaagggacttatattatcggaggg 6513537  T
Q  909 actatgatttgaagatcattcttaatt 935  Q
    |||||| ||| ||||||||||||||||    
T  6513536 actatgtttttaagatcattcttaatt 6513510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 26667694 - 26667775
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||| ||||||||||| ||| |||| ||||||||||||    
T  26667694 ggactatgatcttaaaagtactctttattctgaagggacatatattatcaaagggactatg-ttttaagaccattcttaattc 26667775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 26939291 - 26939372
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||| ||||||||||| ||| |||| ||||||||||||    
T  26939291 ggactatgatcttaaaagtactctttattctgaagggacatatattatcaaagggactatg-ttttaagaccattcttaattc 26939372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 29167647 - 29167566
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||| ||| ||| |||| ||||||||||||    
T  29167647 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaagggacaatg-ttttaagaccattcttaattc 29167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 37549826 - 37549745
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||||| |||||||| ||| |||| ||||||||||||    
T  37549826 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaatggactatg-tttcaagaccattcttaattc 37549745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 556964 - 557079
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| || |||||||| |  ||| ||||||||  | ||||    
T  556964 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatccaacttctccatgaattgaagaagaatatatat 557062  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  557063 gtttaagatcattctta 557079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 32461374 - 32461258
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||| || || ||||||| ||| | ||||||||| |||||||| |  || ||| ||||||||  | ||||    
T  32461374 taacttctccaaatatcaatatggtatttcaaccgctaaaatatggtgttacgaccattctaacatctaacttattcaagaattgaagaagaatatatat 32461275  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  32461274 gtttaagatcattctta 32461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 36937337 - 36937222
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  36937337 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 36937239  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  36937238 gtttaagatcattctta 36937222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 36942091 - 36941976
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  36942091 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 36941993  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  36941992 gtttaagatcattctta 36941976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 41996929 - 41997044
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  41996929 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 41997027  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  41997028 gtttaagatcattctta 41997044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 42001698 - 42001813
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  42001698 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 42001796  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  42001797 gtttaagatcattctta 42001813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 7452176 - 7452255
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  7452176 ggactatgatcttaaaagtactctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 7452255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 856 - 936
Target Start/End: Original strand, 36429133 - 36429212
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||||||||||||||||| |||||| |||||| ||||| |||||||| | ||||||| ||| |||| ||||||||||||    
T  36429133 actatgatcttaaaaatactctttattctgaagggacatatattatcgacgagactatg-ttttaagaccattcttaattc 36429212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 23757489 - 23757407
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||||||||||   |||| ||||| |||||||||||||||||| ||| |||| | ||| ||||||    
T  23757489 ggactatgatcttaaaagtactatttattcccaagggacatacattatcgaagggactatgtttttaagacctttcataattc 23757407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 23822945 - 23822863
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||||||||||   |||| ||||| |||||||||||||||||| ||| |||| | ||| ||||||    
T  23822945 ggactatgatcttaaaagtactatttattcccaagggacatacattatcgaagggactatgtttttaagacctttcataattc 23822863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 36424059 - 36424140
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||| || |||| ||| |||| ||||||||||||    
T  36424059 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaagagattatg-ttttaagaccattcttaattc 36424140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 37652624 - 37652543
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| | || |||||| |||||| ||||| ||||||||| |||||||| ||| |||| ||||||||||||    
T  37652624 ggactatgatcttaaaagtgctctttattctgaagggacatatattatcgaatggactatg-tttcaagaccattcttaattc 37652543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 561736 - 561851
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | |||||| || || |||||||| |  ||| ||||||||  | ||||    
T  561736 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctgacatccaacttctccatgaattgaagaagaatatatat 561834  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  561835 gtttaagatcattctta 561851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 854 - 939
Target Start/End: Original strand, 12103447 - 12103531
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||||| |||| | |||| |||||| || || |||||||||||||||| | ||| |||||||||| |||||||||    
T  12103447 ggactatgatcttaaaagtactctatattctgaaggcacgtatattatcgaagggacta-ggttttaagatcattcgtaattctga 12103531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 710 - 779
Target Start/End: Original strand, 7086632 - 7086702
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagca-ttctaacctctaa 779  Q
    |||||||||||||||| ||||||||||| ||| ||||||| |||| |||||| | || |||||||||||||    
T  7086632 taacatctccaaatatcaatatggtattacaatcactcaaatatgatgctaccaccatttctaacctctaa 7086702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 765 - 819
Target Start/End: Complemental strand, 21323748 - 21323694
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcat 819  Q
    ||||||||| ||||||||||| || ||| ||||||||| |||| |||||||||||    
T  21323748 cattctaacatctaacttctccaagaattgaagaagaatatatatttaagatcat 21323694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 8e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 741 - 902
Target Start/End: Original strand, 10498381 - 10498542
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacat 840  Q
    ||||||||| ||||||| ||| | ||||||||| | ||||||||  || ||| ||||||||| ||||| ||||||||||| |||||| || |||| ||||    
T  10498381 accactcaaatatggtgttaccaccattctaacatataacttctacaagaattgaagaagaatatattcttaagatcatttttaattttcgaagggacat 10498480  T
Q  841 tataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatc 902  Q
    |||||| ||| |  ||||| |||||||||||| ||||||||   ||||| ||||||||||||    
T  10498481 tatacctcaaaagagactacgatcttaaaaattctatttatgtcgaagggacataaattatc 10498542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 741 - 902
Target Start/End: Original strand, 10503410 - 10503571
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacat 840  Q
    ||||||||| ||||||| ||| | ||||||||| | ||||||||  || ||| ||||||||| ||||| ||||||||||| |||||| || |||| ||||    
T  10503410 accactcaaatatggtgttaccaccattctaacatataacttctacaagaattgaagaagaatatattcttaagatcatttttaattttcgaagggacat 10503509  T
Q  841 tataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatc 902  Q
    |||||| ||| |  ||||| |||||||||||| ||||||||   ||||| ||||||||||||    
T  10503510 tatacctcaaaagagactacgatcttaaaaattctatttatgtcgaagggacataaattatc 10503571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 710 - 827
Target Start/End: Original strand, 4579786 - 4579904
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcg-aataatcgaagaagaaaatatt 808  Q
    |||||||||||||| | ||||||||||||| | |||| || |||| |||||| | ||||||||| |||||||||| | || |||||||||||||  ||||    
T  4579786 taacatctccaaatgtcaatatggtatttccagcacttaaatatgatgctaccaccattctaacatctaacttcttgaaaaaatcgaagaagaatttatt 4579885  T
Q  809 tttaagatcattcttaatt 827  Q
    |||||||||||||||||||    
T  4579886 tttaagatcattcttaatt 4579904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 9008424 - 9008540
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    ||||||||||  |||| ||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  ||| ||||||||  | ||||    
T  9008424 taacatctccggatatcaatatggtatttcaaccactcaaatatggtgctacgatcattctaacatctaacttctccatgaattgaagaagaatatatat 9008523  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  9008524 gtttaagatcattctta 9008540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 44510498 - 44510382
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaa--aatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| |||||||| || |  ||| |||||||||   ||||    
T  44510498 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgctacgaccattctaacatctaacttttccatgaattgaagaagaatgtatat 44510399  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  44510398 gtttaagatcattctta 44510382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 807
Target Start/End: Complemental strand, 9650789 - 9650692
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||  || ||| ||||||||| ||||    
T  9650789 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgttacgaccattctaacatctaacttcttcaagaattgaagaagaatatat 9650692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 23866337 - 23866453
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| | ||| ||||| ||||||||||  || ||| ||||||||  | ||||    
T  23866337 taacttctccaaatatcaatatggtatttcaaccactcaaatatggtgttacgaccatactaacatctaacttcttcaagaattgaagaagaatatatat 23866436  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  23866437 gtttaagatcattctta 23866453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 743 - 898
Target Start/End: Original strand, 13344884 - 13345039
Alignment:
Q  743 cactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacatta 842  Q
    ||||||| ||| ||| ||| | ||||||||| ||||||||||  || ||| |||||| || | ||| |||||||||||||||||| || |||| ||||||    
T  13344884 cactcaaatatagtgttaccaccattctaacatctaacttctacaagaattgaagaaaaatacattcttaagatcattcttaattttcgaagggacatta 13344983  T
Q  843 taccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaat 898  Q
    |||| ||| |  ||||| ||| |||||||||||||||||   ||||| ||||||||    
T  13344984 tacctcaaaagagactacgatattaaaaatactatttatgtcgaagggacataaat 13345039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 710 - 846
Target Start/End: Complemental strand, 23246772 - 23246644
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||| | |||||||||||||||||||| || |||||||||        |||||| | | | ||||| ||||||||||||||||  |||||    
T  23246772 taacatctccaaatgttaatatggtatttcaaccacttaaatatggtgct--------tctaacatatgatttctcaaataatcgaagaagaatttattt 23246681  T
Q  810 ttaagatcattcttaattatcaaaggtacattatacc 846  Q
    ||||||||||| |||||| ||||||| | ||||||||    
T  23246680 ttaagatcattattaattttcaaagggatattatacc 23246644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 765 - 902
Target Start/End: Original strand, 13337018 - 13337155
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatc 864  Q
    ||||||||| ||||||||||  || ||| ||||||||| | ||| |||||||||||||||||| || || | |||||||||| ||| |  ||||| ||||    
T  13337018 cattctaacatctaacttctacaagaattgaagaagaatacattcttaagatcattcttaattttcgaaaggacattatacctcaaaagagactacgatc 13337117  T
Q  865 ttaaaaatactatttattatgaaggaacataaattatc 902  Q
    |||||||| ||||||||   ||| | ||||||||||||    
T  13337118 ttaaaaattctatttatatcgaaaggacataaattatc 13337155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 8268713 - 8268795
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| ||||||||| |||||||| ||| |||| ||||||||||||    
T  8268713 ggactatgatcttaaaagtactctttattccgaagggacatatattatcgaatggactatgtttttaagaccattcttaattc 8268795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 710 - 784
Target Start/End: Original strand, 19640566 - 19640640
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttct 784  Q
    |||| ||||||||||| |||||| || ||||||||||||| ||||||||||| | ||||||||| ||||||||||    
T  19640566 taacttctccaaatatcaatatgatacttcaaccactcaaatatggtgctacgaccattctaacatctaacttct 19640640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 858 - 936
Target Start/End: Complemental strand, 42626260 - 42626183
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||| |||| |||||| |||||| ||||| ||||| |||||||||||| ||| |||| ||||||||||||    
T  42626260 tatgatcttaaaagtactctttattctgaagggacatatattattgaagggactatg-ttttaagaccattcttaattc 42626183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 935
Target Start/End: Original strand, 2628912 - 2629136
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||| |||| || ||||||||| | ||||||||||| || |||||| | | |||| |||||| |||||||||  | |||| | | |||| ||||      
T  2628912 taacatcttcaaaaatcaatatggtactacaaccactcaaatacggtgctgccaccattataacctttaacttctccgaaaatcaagggagaatatatgc 2629011  T
Q  810 ttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaaggga 909  Q
    ||||||| ||| |||||| |  |||| |||||||||  ||| | || ||||||||||||||||||| |||||| | |||  || |||||| || ||  ||    
T  2629012 ttaagatgatttttaatt-ttgaagggacattatacatcaaaaggggctatgatcttaaaaatactctttattctaaagagacgtaaattgtcaaataga 2629110  T
Q  910 ctatgatttgaagatcattcttaatt 935  Q
    ||||  | | ||||||||||||||||    
T  2629111 ctatactcttaagatcattcttaatt 2629136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 8076314 - 8076430
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||| || ||  | ||||| ||| ||||||||||  |  ||| ||||||||  | ||||    
T  8076314 taacttctccaaatatcaatatggtatttcaaccactcaaatatgatgttatgatcattcgaacatctaacttctttaggaattgaagaagaatatatat 8076413  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  8076414 gtttaagatcattctta 8076430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 26341628 - 26341709
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||| ||||||  ||||||||| |||| |||| ||||||||||||    
T  26341628 ggactatgatcttaaaagtattctttattctgaagggacatatattatcacagggactat-attttaagaccattcttaattc 26341709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 854 - 935
Target Start/End: Original strand, 4930643 - 4930721
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| |||| |||||  |||||  ||||   ||||||||||||||||| ||| |||| |||||||||||    
T  4930643 ggactatgatcttaaaagtactctttatcctgaagagacat---ttatcgaagggactatgtttttaagaccattcttaatt 4930721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 6898132 - 6898050
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| |||||| ||  ||||||||||||  |  ||| ||||||||||||| | | |||| ||||||||||||    
T  6898132 ggactatgatcttaagaatactcttatttatgaaggaacgaattttaccgaagggactatgttcttaagaccattcttaattc 6898050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 936
Target Start/End: Complemental strand, 45748342 - 45748261
Alignment:
Q  855 gactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||| |||||||||||||||| ||||||  ||||  ||||| |||||| ||  ||||||  ||| |||||||||||||||||    
T  45748342 gactttgatcttaaaaatactctttattccgaagagacatatattatcaaattgactatatttttaagatcattcttaattc 45748261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 852 - 935
Target Start/End: Complemental strand, 16649312 - 16649230
Alignment:
Q  852 aaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    |||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| |||||||||||    
T  16649312 aaggactatgatcttaaaaatactctttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttaatt 16649230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 51041185 - 51041101
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||||| |||| |||||| | |||||||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  51041185 ggactatgatcttaaaagtactctttattctaaaggaacatatattatcgaagggactatg-ttttaagaccattcttaattctga 51041101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 26927395 - 26927314
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||| ||  |||| ||||||||||||    
T  26927395 ggactatgatcttaaaaatactctttattctgaagggacatatattatcgaagggactatg-ttgtaagaccattcttaattc 26927314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 10135748 - 10135827
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| ||||||||||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  10135748 ggactatgatcttaaaagtactctttattatgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 10135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 10140516 - 10140595
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| ||||||||||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  10140516 ggactatgatcttaaaagtactctttattatgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 10140595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 710 - 785
Target Start/End: Complemental strand, 18784383 - 18784308
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctc 785  Q
    |||| ||| ||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| | |||||||||    
T  18784383 taacttcttcaaatatcaatatggtatttcaaccactcaaatatggtgctacgaccattctaacatttaacttctc 18784308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 807 - 933
Target Start/End: Complemental strand, 27311511 - 27311384
Alignment:
Q  807 tttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatg-aaggaacataaattatcgaa 905  Q
    |||||||||||| |||||||| || |||| |||||||||| ||| | || | ||||||||||| ||| ||||||||  | |||| |||||||||||||||    
T  27311511 tttttaagatcactcttaattttcgaagggacattatacctcaaaagggtcaatgatcttaaacatattatttatttcgaaagggacataaattatcgaa 27311412  T
Q  906 gggactatgatttgaagatcattcttaa 933  Q
     |||||||  | |||||| |||||||||    
T  27311411 aggactatactctgaagaccattcttaa 27311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 3094357 - 3094472
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  3094357 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 3094455  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  3094456 gtttaagatcattctta 3094472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 47450902 - 47450821
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| |||||||||| ||||||| ||| |||| |||||||||||    
T  47450902 ggactatgatcttaaaagtactctttattccgaagggacatatattatcgaagagactatgtttttaagaccattcttaatt 47450821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 932
Target Start/End: Complemental strand, 33300922 - 33300844
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattctta 932  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||| |||||||||||||||||| ||| |||| | ||||||    
T  33300922 ggactatgatcttaaaagtactctttattccgaagggacatatattatcgaagggactatgtttttaagaccgttctta 33300844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 765 - 869
Target Start/End: Original strand, 7882316 - 7882418
Alignment:
Q  765 cattctaacctctaacttctcgaataatcgaagaagaaaatatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatc 864  Q
    ||||||||| ||||||||||  || ||||||||||||| ||| |||||||||||||| ||||| |  |||| |||||||| || || | |||||||||||    
T  7882316 cattctaacgtctaacttcttcaagaatcgaagaagaatata-ttttaagatcattcataatttttgaagggacattata-ccgaaaagggactatgatc 7882413  T
Q  865 ttaaa 869  Q
    |||||    
T  7882414 ttaaa 7882418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 25844174 - 25844253
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||  |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  25844174 ggactatgatcttaaaagtactctttatcctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 25844253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 39200438 - 39200356
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||| |||||||||| | |||| ||||||  ||||| || || |||||||||||||||||| ||| |||| ||||||||||||    
T  39200438 ggacaatgatcttaatagtactctttatttcgaagggacttatattatcgaagggactatgtttttaagaccattcttaattc 39200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 19798677 - 19798596
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||| | | |||| ||||||  ||||| || || ||||||||||||| |||| |||||||| |||||||||||    
T  19798677 ggactatgatcttcatagtactctttattccgaagggacttatattatcgaagggattatgttttgaagaccattcttaatt 19798596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 710 - 773
Target Start/End: Original strand, 33055306 - 33055370
Alignment:
Q  710 taacatctccaaatataaatatggta-tttcaaccactcaactatggtgctactagcattctaac 773  Q
    |||| ||||||||||| ||||| ||| |||||||||||||| ||||||||||| | |||||||||    
T  33055306 taacttctccaaatatcaatatcgtactttcaaccactcaaatatggtgctacgaccattctaac 33055370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 714 - 784
Target Start/End: Complemental strand, 39037508 - 39037438
Alignment:
Q  714 atctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttct 784  Q
    |||||||||| | ||||| |||||||||||||| || ||||||||||| | |||| |||  ||||||||||    
T  39037508 atctccaaatgtgaatatagtatttcaaccacttaaatatggtgctaccaccattttaatatctaacttct 39037438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 40166408 - 40166489
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||| | |||| ||||||  ||||| || || |||||| ||||||||||| ||| |||| ||||||||||||    
T  40166408 ggactatgatcttaatagtact-tttattccgaagggacttatattatcaaagggactatgtttttaagaccattcttaattc 40166489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 741 - 819
Target Start/End: Complemental strand, 8267633 - 8267553
Alignment:
Q  741 accactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatatttttaagatcat 819  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||||| |  |||  |||||||  | ||||||||||||||||    
T  8267633 accactcaaatatggtgctacgaccattctaacatctaacttctccatgaataaaagaagaatatatatttttaagatcat 8267553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 935
Target Start/End: Complemental strand, 28434306 - 28434229
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    |||||||||| ||||| | ||||||  ||||  ||||| ||||||||| |||||||| ||| |||| |||||||||||    
T  28434306 tatgatcttacaaatattctttatttcgaagagacatatattatcgaatggactatgcttttaagaccattcttaatt 28434229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 939
Target Start/End: Original strand, 38621125 - 38621210
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||||||||||| | || | ||||||  ||||| || || |||||| ||||||||||| ||| |||| |||| ||||||||||    
T  38621125 ggactatgatcttaatagtaatctttattccgaagggacttatattatcaaagggactatgtttttaagagcattattaattctga 38621210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 39588043 - 39587962
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| || | ||||||  || || ||||| ||||||||||||||| || ||| |||| |||| ||||||    
T  39588043 ggactatgatcttaaaagtattctttattccgatgggacatatattatcgaagggactgtgtttttaagaccatttttaatt 39587962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 827
Target Start/End: Original strand, 140026 - 140143
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||| | | |||||||||||||||||| || || |||| ||| | |||| |||| | ||||||||| || ||||||||||||| ||||||    
T  140026 taacatctccaaatgtcagtatggtatttcaaccacttaaatagggtgttacaatcattataacatataacttctccaagaatcgaagaagaatatattt 140125  T
Q  810 ttaagatcattcttaatt 827  Q
    || | |||||||||||||    
T  140126 ttcatatcattcttaatt 140143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 854 - 949
Target Start/End: Complemental strand, 443619 - 443525
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcatta 949  Q
    |||||||||| |||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| |||||||||||| || ||| |||||    
T  443619 ggactatgattttaaaagtactctttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattccgaaggaacatta 443525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 5e-19; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 6596183 - 6596067
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatt- 808  Q
    |||| ||||||||| | ||||| ||||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  ||| ||| ||||| |||||     
T  6596183 taacttctccaaatgtcaatatagtatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgaattgaataagaatatattt 6596084  T
Q  809 -tttaagatcattctta 824  Q
     ||||||||||||||||    
T  6596083 gtttaagatcattctta 6596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 710 - 827
Target Start/End: Complemental strand, 13166962 - 13166845
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatattt 809  Q
    |||||||||||||| | | |||||||||||||||||| || || |||| ||| | |||| |||| | ||||||||| || ||||||||||||| ||||||    
T  13166962 taacatctccaaatgtcagtatggtatttcaaccacttaaatagggtgttacaatcattataacatataacttctccaagaatcgaagaagaatatattt 13166863  T
Q  810 ttaagatcattcttaatt 827  Q
    || | |||||||||||||    
T  13166862 ttcatatcattcttaatt 13166845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 758042 - 757960
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||| | |||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  758042 ggactatgatcttaaaagtactctttaatctgaagggacatatattatcgaagggactatgtttttaagaccattcttaattc 757960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 18467645 - 18467726
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  18467645 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaagggactatg-ttttaagaccattcttaattc 18467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 14438372 - 14438293
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||||||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  14438372 ggactatgatcttaaaagtactctttattctgaaggaacat---ttatcgaagggactatgtttttaagaccattcttaattc 14438293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 804 - 928
Target Start/End: Original strand, 18011685 - 18011809
Alignment:
Q  804 atatttttaagatcattcttaattatcaaaggtacattataccccaagaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcg 903  Q
    ||||||||||||||||| |||||| |  || | |||||| ||| |||   ||| |||| ||||||||||| |||||||| |||||  |||||||||||||    
T  18011685 atatttttaagatcatttttaatttttgaacggacattagacctcaaaggggattatggtcttaaaaatattatttattttgaagcgacataaattatcg 18011784  T
Q  904 aagggactatgatttgaagatcatt 928  Q
    ||||||||||| ||| |||| ||||    
T  18011785 aagggactatgtttttaagaccatt 18011809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 855 - 936
Target Start/End: Original strand, 27709353 - 27709431
Alignment:
Q  855 gactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||||||| |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  27709353 gactatgatcttaaaaatactctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 27709431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 858 - 937
Target Start/End: Original strand, 46964433 - 46964512
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattct 937  Q
    ||||||||||||| |||| |||||| |||||| ||||| |||||||||| ||||||| ||| |||| |||||||||||||    
T  46964433 tatgatcttaaaagtactctttattctgaagggacatatattatcgaagagactatgtttttaagaccattcttaattct 46964512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 29350660 - 29350741
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||||||||||||||||| | |||||| |||||| ||||| |||||||||||||||||| ||| |||| |||| |||||||    
T  29350660 ggactatgatcttaaaaatattctttattctgaagggacatatattatcgaagggactatg-ttttaagaccattattaattc 29350741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 854 - 936
Target Start/End: Original strand, 55326196 - 55326277
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||||||||| |||| ||| |||| ||||||||||||    
T  55326196 ggactatgatcttaaaagtactctttattctgaagggacatatattatcgaagggattatg-ttttaagaccattcttaattc 55326277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 3033911 - 3034026
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  3033911 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 3034009  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  3034010 gtttaagatcattctta 3034026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 3672854 - 3672969
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  3672854 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 3672952  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  3672953 gtttaagatcattctta 3672969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 3692886 - 3693001
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  3692886 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 3692984  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  3692985 gtttaagatcattctta 3693001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 8069946 - 8070061
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  8069946 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 8070044  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  8070045 gtttaagatcattctta 8070061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 8883438 - 8883553
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaa--aatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | |||||||||   ||||    
T  8883438 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatgtatat 8883536  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  8883537 gtttaagatcattctta 8883553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 939
Target Start/End: Original strand, 18472427 - 18472511
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctga 939  Q
    ||||||| ||||||||| |||| |||||| | |||| ||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  18472427 ggactatcatcttaaaagtactctttattctaaagggacatatattatcgaagggactatg-ttttaagaccattcttaattctga 18472511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 855 - 936
Target Start/End: Complemental strand, 39775401 - 39775321
Alignment:
Q  855 gactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||||||||||||| ||||||||||| |||||| ||||| ||||||| | |||||||| ||| |||| ||||||||||||    
T  39775401 gactatgatcttaaaagtactatttattctgaagggacatatattatcgcaaggactatg-ttttaagaccattcttaattc 39775321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 710 - 824
Target Start/End: Original strand, 8888198 - 8888313
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || |||||||| |||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  8888198 taacttctccaaatatcaata-ggcatttcaacaactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 8888296  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  8888297 gtttaagatcattctta 8888313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 17025779 - 17025698
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    |||||||| ||||||||||||| |||||| |||||| ||||| ||||||||||| |||||| | | |||| | |||||||||    
T  17025779 ggactatggtcttaaaaatactttttattctgaagggacatatattatcgaaggaactatgttcttaagaactttcttaatt 17025698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 23661138 - 23661059
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  23661138 ggactatgatcttaaaagtattctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 23661059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 23665797 - 23665718
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  23665797 ggactatgatcttaaaagtattctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 23665718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 854 - 936
Target Start/End: Complemental strand, 24038045 - 24037966
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||| || | |||||| |||||| ||||   ||||||||||||||||| ||| |||| ||||||||||||    
T  24038045 ggactatgatcttaaaagtattctttattctgaagggacat---ttatcgaagggactatgtttttaagaccattcttaattc 24037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 856 - 935
Target Start/End: Original strand, 19339727 - 19339806
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    |||||| ||||||||||| |||||||| |||||  ||||||||||| ||| | |||||| ||| |||| |||||||||||    
T  19339727 actatggtcttaaaaatattatttattttgaagcgacataaattattgaatgaactatggttttaagaccattcttaatt 19339806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 851 - 913
Target Start/End: Original strand, 49019797 - 49019858
Alignment:
Q  851 gaaggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactat 913  Q
    |||||||||||||||||||| || |||||||| | |||| |||||||| || |||||||||||    
T  49019797 gaaggactatgatcttaaaa-tattatttattttaaagggacataaataattgaagggactat 49019858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 935
Target Start/End: Complemental strand, 2207422 - 2207342
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    |||| |||||||||||| |||| ||||||  ||||  ||||| ||||| |||||||||||| ||| |||| |||||||||||    
T  2207422 ggaccatgatcttaaaagtactctttattccgaagagacatatattattgaagggactatgcttt-aagaccattcttaatt 2207342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 907
Target Start/End: Original strand, 55431739 - 55431788
Alignment:
Q  858 tatgatcttaaaaatactatttattatgaaggaacataaattatcgaagg 907  Q
    ||||||||||||| |||| |||||| |||||| ||||| |||||||||||    
T  55431739 tatgatcttaaaagtactctttattctgaagggacatatattatcgaagg 55431788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 714 - 824
Target Start/End: Original strand, 256098 - 256207
Alignment:
Q  714 atctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaagaaaatatttttaa 813  Q
    |||||||||| | |||||||||||| |||||||||| ||| ||| ||  | ||||||||| | |||| |||| || ||||||||||||| ||| ||||||    
T  256098 atctccaaatgtcaatatggtattt-aaccactcaaatatagtgttatcaccattctaacatgtaacatctctaagaatcgaagaagaatatacttttaa 256196  T
Q  814 gatcattctta 824  Q
    |||||||||||    
T  256197 gatcattctta 256207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 935
Target Start/End: Original strand, 7526 - 7606
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||||| |||| |||||| |||||  ||||| |||||||||||||||||| ||| |||| |||||||||||    
T  7526 ggactatgatcttaaaagtactctttattctgaagagacatatattatcgaagggactatg-ttttaagaccattcttaatt 7606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 9707 - 9592
Alignment:
Q  710 taacatctccaaatataaatatggtatttcaaccactcaactatggtgctactagcattctaacctctaacttctcgaataatcgaagaaga--aaatat 807  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||||||| |  | | ||||||||  | ||||    
T  9707 taacttctccaaatatcaata-ggcatttcaaccactcaaatatggtgctacgaccattctaacatctaacttctccatgagttgaagaagaatatatat 9609  T
Q  808 ttttaagatcattctta 824  Q
     ||||||||||||||||    
T  9608 gtttaagatcattctta 9592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 854 - 953
Target Start/End: Complemental strand, 148067 - 147968
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattctgagggatcattatatc 953  Q
    ||||||||||||||||| || | |||||| |||||| | ||| ||||||||| |||||||| ||| |||||| |||||||||| || ||  |||||||||    
T  148067 ggactatgatcttaaaagtattctttattctgaagggagatacattatcgaatggactatgtttttaagatctttcttaattccgatgggacattatatc 147968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 856 - 936
Target Start/End: Original strand, 4395 - 4474
Alignment:
Q  856 actatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    |||||||||||||||||| | ||||||  ||||| || || |||||||||||||||||| ||| |||| ||||||||||||    
T  4395 actatgatcttaaaaatattctttattccgaagggacgtatattatcgaagggactatgcttttaaga-cattcttaattc 4474  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 854 - 935
Target Start/End: Original strand, 25874 - 25955
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaatt 935  Q
    ||||||||||||||| |  ||| ||||||  ||||| || || |||||||||||||||||| ||| |||| |||||||||||    
T  25874 ggactatgatcttaatagcactctttattccgaagggacttatattatcgaagggactatgtttttaagaccattcttaatt 25955  T

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Target: scaffold0690 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 854 - 901
Target Start/End: Original strand, 5717 - 5764
Alignment:
Q  854 ggactatgatcttaaaaatactatttattatgaaggaacataaattat 901  Q
    ||||||||||||||||| |||| |||||| |||||| |||||||||||    
T  5717 ggactatgatcttaaaagtactctttattctgaagggacataaattat 5764  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 936
Target Start/End: Complemental strand, 171444 - 171364
Alignment:
Q  855 gactatgatcttaaaaatactatttattatgaaggaacataaattatcgaagggactatgatttgaagatcattcttaattc 936  Q
    ||||||||||||||||||||| ||  || |||||| ||| || ||||||||||||||| | | | |||| ||||||||||||    
T  171444 gactatgatcttaaaaatactcttatttctgaagggaca-aatttatcgaagggactacgttcttaagaccattcttaattc 171364  T

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