View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-21 (Length: 138)
Name: NF4647-Insertion-21
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-21 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 34866813 - 34866683
Alignment:
| Q |
8 |
agagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaattttaagacagcttttaaacat |
107 |
Q |
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| T |
34866813 |
agagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaattttaagacagcttttaaacat |
34866714 |
T |
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| Q |
108 |
gttataagctatttttataagttctgtcatg |
138 |
Q |
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| T |
34866713 |
gttataagctatttttataagttctgtcatg |
34866683 |
T |
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Target: chr4 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 51857250 - 51857372
Alignment:
| Q |
16 |
gcttataagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaattttaagacagcttttaaacatgttataag |
115 |
Q |
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| T |
51857250 |
gcttagaaggtggtcgatatccttcactttacaaattgattttgtagggttgagttagagccaatccaaattttaagacagcttttaaacatgttataag |
51857349 |
T |
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| Q |
116 |
ctatttttataagttctgtcatg |
138 |
Q |
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| T |
51857350 |
ctatttttataagttctgtcatg |
51857372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 37579956 - 37579900
Alignment:
| Q |
31 |
gatatccttcacattactaactgattttgtagggttgagttagagccaatccaaatt |
87 |
Q |
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| T |
37579956 |
gatatctttcaccttacaagctgattttgtagggttgagttagaccaaatctaaatt |
37579900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 30014194 - 30014155
Alignment:
| Q |
55 |
ttttgtagggttgagttagagccaatccaaattttaagac |
94 |
Q |
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| T |
30014194 |
ttttgtagggttgagttagacccaacctaaattttaagac |
30014155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 14595904 - 14595865
Alignment:
| Q |
55 |
ttttgtagggttgagttagagccaatccaaattttaagac |
94 |
Q |
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| T |
14595904 |
ttttgtaaggttgagttaggtccaatccaaattttaagac |
14595865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 16015432 - 16015393
Alignment:
| Q |
55 |
ttttgtagggttgagttagagccaatccaaattttaagac |
94 |
Q |
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| T |
16015432 |
ttttgtaaggttgagttaggtccaatccaaattttaagac |
16015393 |
T |
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