View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-23 (Length: 501)
Name: NF4647-Insertion-23
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-23 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 47275552 - 47275059
Alignment:
| Q |
8 |
cttaagatatttatgtatggttggggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacct |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47275552 |
cttaagatgtttatgtatggttggggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacct |
47275453 |
T |
|
| Q |
108 |
ggtaatcgctgatgtgcacctgcctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaagtggggg |
207 |
Q |
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| T |
47275452 |
ggtaatcgctgatgtgcacctgcctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaagtggggg |
47275353 |
T |
|
| Q |
208 |
gatctgttctgtaatcttcagttcttcatcttttctttgtttcttcattttcactcttatttattcatataattattaatcaatgattgtttggtgaacg |
307 |
Q |
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| T |
47275352 |
gatctgttctgtaatcttcagttcttcatctttgctttgtttcttcattttcactctcatttattcatataattattaatcaatgattgtttggtgaacg |
47275253 |
T |
|
| Q |
308 |
tttgttgttttatttcagtgttgtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgag |
407 |
Q |
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| T |
47275252 |
tttgttgttttatttcagtgttgtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgag |
47275153 |
T |
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| Q |
408 |
attacaggagctaaagaccatatggcagcatgtaattcggaagaagaaggacaatgaggacctatcagctcagaagaagtcccagtctgtttgg |
501 |
Q |
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| T |
47275152 |
attacaggagctaaagaccatttggcagcatgtaattcggaagaagaaggacaatgaggacctatcagctcagaagaagtcccagtctgtttgg |
47275059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 31 - 449
Target Start/End: Complemental strand, 47281207 - 47280796
Alignment:
| Q |
31 |
gggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacctgc |
130 |
Q |
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|||||||||||||| ||||||||| |||||| ||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||| || ||| ||| |
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| T |
47281207 |
gggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcaagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgc |
47281108 |
T |
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| Q |
131 |
ctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaag-tggggggatctgttctgtaatcttcagt |
229 |
Q |
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| T |
47281107 |
ctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcc---tgtcataagtaagttggggggatctgttttataattttcagc |
47281011 |
T |
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| Q |
230 |
tcttcatcttttctttgtttcttcattttcactcttatttattcatataattattaatcaatgattgtttggtgaacgtttgttgttttatttcagtgtt |
329 |
Q |
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| T |
47281010 |
tcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgtt--gtta---taaattgtttgatttcagtgtt |
47280916 |
T |
|
| Q |
330 |
gtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgagattacaggagctaaagaccata |
429 |
Q |
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| T |
47280915 |
gtctgcacatggtgaaacggagctggtgatgaaggcaatttcccacggtgcccgtgattttctgctgaaacctgtgagattggaggagctaaggaacatt |
47280816 |
T |
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| Q |
430 |
tggcagcatgtaattcggaa |
449 |
Q |
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|||||||||||||||||||| |
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| T |
47280815 |
tggcagcatgtaattcggaa |
47280796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 49061335 - 49061161
Alignment:
| Q |
29 |
tggggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacct |
128 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||| ||| | |
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| T |
49061335 |
tggggattgcagtaaccacaactagtcaagcaataacggcgttgaccatgttgagagaaaacaaagacaagtttgacctggtaatcagtgatgtacacat |
49061236 |
T |
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| Q |
129 |
gcctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaagtgggg |
206 |
Q |
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| T |
49061235 |
gccggacatggatggatttaagctgcttgaacttgtgggacttgaaatggaccttcc---cgtcataagtaagtgggg |
49061161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 49061048 - 49060905
Alignment:
| Q |
313 |
tgttttatttcagtgttgtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgagattac |
412 |
Q |
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||||| |||||||||||||||| || | | |||| |||| |||||||| | | ||| ||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
49061048 |
tgtttgatttcagtgttgtctgcatatggtgatacaaagctggtgatgaaaggaatttcccatggtgcctgtgattatctgctgaaacctgtgagattag |
49060949 |
T |
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| Q |
413 |
aggagctaaagaccatatggcagcatgtaattcggaagaagaag |
456 |
Q |
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| T |
49060948 |
aggagctaaagaacatttggcagcatgtaattaggaagaagaag |
49060905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 48870569 - 48870464
Alignment:
| Q |
77 |
tgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacctgcctgacatggatggacttaagctgcttgaacttgtggaacttgagac |
176 |
Q |
| |
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||||| ||||||||||| |||| |||||||| |||||| | |||| || |||| |||||||||||| ||||||| ||||| ||||| | |||||||| |
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| T |
48870569 |
tgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
48870470 |
T |
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| Q |
177 |
ggacct |
182 |
Q |
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|||||| |
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| T |
48870469 |
ggacct |
48870464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 2904613 - 2904718
Alignment:
| Q |
77 |
tgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacctgcctgacatggatggacttaagctgcttgaacttgtggaacttgagac |
176 |
Q |
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||||| ||||||||||| ||| |||||||| |||||| |||| || |||| |||||||||||| ||||||| ||||| ||||| | |||||||| |
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| T |
2904613 |
tgttgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
2904712 |
T |
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| Q |
177 |
ggacct |
182 |
Q |
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|||||| |
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| T |
2904713 |
ggacct |
2904718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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