View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-29 (Length: 310)
Name: NF4647-Insertion-29
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 20140615 - 20140312
Alignment:
| Q |
8 |
tgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140615 |
tgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggaga |
20140516 |
T |
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| Q |
108 |
ggatttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140515 |
ggatttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgctt |
20140416 |
T |
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| Q |
208 |
gaatcattctttctctttattttgtaatttttatgttctgtctttt-atatgggaagaaatatctcatacgagagtagtatttattggcctttgtatttt |
306 |
Q |
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| T |
20140415 |
gaatcattctttctctttattttgtaatttttatgttctgtcttttaatatgggaagaaatatctcatacgagagtagtatttattggcatttgtatttt |
20140316 |
T |
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| Q |
307 |
gtat |
310 |
Q |
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|||| |
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| T |
20140315 |
gtat |
20140312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 44318030 - 44317727
Alignment:
| Q |
8 |
tgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318030 |
tgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggaga |
44317931 |
T |
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| Q |
108 |
ggatttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317930 |
ggatttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgctt |
44317831 |
T |
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| Q |
208 |
gaatcattctttctctttattttgtaatttttatgttctgtctttt-atatgggaagaaatatctcatacgagagtagtatttattggcctttgtatttt |
306 |
Q |
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| T |
44317830 |
gaatcattctttctctttattttgtaatttttatgttctgtcttttaatatgggaagaaatatctcatacgagagtagtatttattggcatttgtatttt |
44317731 |
T |
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| Q |
307 |
gtat |
310 |
Q |
| |
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|||| |
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| T |
44317730 |
gtat |
44317727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 29632351 - 29632234
Alignment:
| Q |
120 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattcttt |
219 |
Q |
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||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||| |
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| T |
29632351 |
catgatgatcgtgaacctgttgtttgtacttatgtttgtgacaatggtcatgtttctggtgcttggactgatttacctatgtacatttg-atcattcttt |
29632253 |
T |
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| Q |
220 |
ctctttattttgtaatttt |
238 |
Q |
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| T |
29632252 |
ctctttattttgtattttt |
29632234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 29632181 - 29632116
Alignment:
| Q |
243 |
ttctgtcttttatatgggaagaaatatctcatacgagagtagtatttattggcctttgtattttgt |
308 |
Q |
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|||| ||||| ||||||||||||| |||||||| |||||||||| ||||| || |||||||||||| |
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| T |
29632181 |
ttctttctttaatatgggaagaaagatctcatatgagagtagtacttatttgcatttgtattttgt |
29632116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 16320450 - 16320332
Alignment:
| Q |
120 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatgtacgcttgaatcattcttt |
219 |
Q |
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||||||||||||||||||| |||| | |||||||||| |||||||| || |||||||||| |||||||||| |||||||||| ||| || |||| || |
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| T |
16320450 |
catgatgatggtgaacctgatgtttgtgcttatgtttctgataatgatcgagtttctggtgattggactgatgagcctatgtacactt-cattattcatt |
16320352 |
T |
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| Q |
220 |
ctctttattttgtaattttt |
239 |
Q |
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||||||||| |||| ||||| |
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| T |
16320351 |
ctctttattctgtatttttt |
16320332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 16321573 - 16321519
Alignment:
| Q |
254 |
atatgggaagaaatatctcatacgagagtagtatttattggcctttgtattttgt |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
16321573 |
atatgggaagaaatatctcatatgagagtagtatttatttgcatttgtattttgt |
16321519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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