View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647-Insertion-3 (Length: 1075)
Name: NF4647-Insertion-3
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 422 - 1053
Target Start/End: Complemental strand, 56035722 - 56035083
Alignment:
| Q |
422 |
gacccttaagggaaacattcaccgtttcaagctcagacaccc-----------tactccacct---gctcaatcatccccgccaccactagagattacaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
56035722 |
gacccttaagggaaacattcaccgtttcaagctcagacaccccgaagacaccctactccaccttcagctcaatcatccccgccaccactagagattacaa |
56035623 |
T |
|
| Q |
508 |
aagaggggttaagtcgatacttctttgaaacagactcccaatcatggtttcctcgtttaccaaagaggatatagacaaaatcgatgcagaaatacgagga |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56035622 |
aagaggggttaagtcgatacttctttgaaacagactcccaattatggtttcctcatctaccaaagaggatatagacaaaatcgatgcagaaatacgagga |
56035523 |
T |
|
| Q |
608 |
taaattgtactagcatgtctagatgaagtggcgatcataaagtcattgttatttcagctaggaaaagtcgatgaaataccctccctctacaaacaatctt |
707 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56035522 |
taaattgtactaacatgtctagatgaagtggcgatcataaagacattgttatttcagctaggaaaagtcgatgaaataccctccctctacaaacaatctt |
56035423 |
T |
|
| Q |
708 |
cgaccaaataacctttaccaccataacaattttgatcgcatatatttcttttttactattttgcccttagtaaaacacaattattttgtaaatttaaatt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56035422 |
cgaccaaataacctttaccaccataacaattttgatcgcatatatttcttttttactattttgcccttagtaaaacacaattattttgtaaatttaaatt |
56035323 |
T |
|
| Q |
808 |
ttgaaaatatacaacatgaatattgaaatcgaaatttgaataaattcaaataatatagatattattatattcccctnnnnnnnnnntagttattactaaa |
907 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
56035322 |
ttgaaaatatacaacatgaatactgaaatcgaaatttgaataaattcaaataatatagatattattatattcccctaaaaaaaaaa-agttattactaaa |
56035224 |
T |
|
| Q |
908 |
ttggaaattatcaaattaaatataaatataaagcacagtactatgtgtttgtaatataaaaaactttgggtttaatattggatacatgtaatgttattat |
1007 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| | |||| ||| |
|
|
| T |
56035223 |
tt-gaaattatcaaattaaatataaatataaagcacagtactatgtgtttgtaatat-aaaaacttt-ggtttaatattgattacatat-atgt--atat |
56035130 |
T |
|
| Q |
1008 |
ttgattttgacaatattaaata-tcattgataaaggtcaagaatgga |
1053 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
56035129 |
ttgattttgacataattaaatattcattgattaaagtcaagaatgga |
56035083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 176 - 423
Target Start/End: Complemental strand, 56035997 - 56035753
Alignment:
| Q |
176 |
tgtaagacaaagagaataatcgttccaaaacccttcttaccatataaatgggggaaaactgataaaactttgccgaatctattacctcgacaataatctt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
56035997 |
tgtaagacaaagagaataatcgttccaaaaccctt---accatataaatgggggaaaactgattaaactttgccgaatcaattacctcgacaataatctt |
56035901 |
T |
|
| Q |
276 |
gattttttcgactaattgtactgcttaattagccttatcatttggcgacctccatggtaagttgtttacttgactaatatttgaatttgnnnnnnnagtc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
56035900 |
gattttttcgactaattgtactgcttaattagccttatcatttggtgacctccatggtaagttgtttacttgactaatatttgaatttgtttttttagtc |
56035801 |
T |
|
| Q |
376 |
ggccatcaatccctaacatgtacatgttcagatttccatgtgtgtgga |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56035800 |
ggccatcaatccctaacatgtacatgttcagatttccatgtgtgtgga |
56035753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 56036160 - 56036051
Alignment:
| Q |
57 |
caatatttagagacaaagttagtcctatatatttatgaaagtattgtgggttacaacatctagcctcaatggcctatttttgtgggtagtactagtatgt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
56036160 |
caatatttagagacaaagttagtcctat----ttatgaaagtattgtgggttacgacatctagcctcagtggcctatttttgtgggt------agtatgt |
56036071 |
T |
|
| Q |
157 |
gattattcccattgttatgt |
176 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
56036070 |
gattattcccattgttatgt |
56036051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 807 - 852
Target Start/End: Original strand, 27348044 - 27348089
Alignment:
| Q |
807 |
tttgaaaatatacaacatgaatattgaaatcgaaatttgaataaat |
852 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
27348044 |
tttgaaaacatacaatatgaatattgaaattgaaattttaataaat |
27348089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University