View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-30 (Length: 239)
Name: NF4647-Insertion-30
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-30 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 4172279 - 4172048
Alignment:
| Q |
8 |
gataatgtgcagcgtctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctca |
107 |
Q |
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| T |
4172279 |
gataacgtgcagcgtctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctca |
4172180 |
T |
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| Q |
108 |
cagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcctgatcctaaatttaatgtttcatttcataattt |
207 |
Q |
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| T |
4172179 |
cagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataattt |
4172080 |
T |
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| Q |
208 |
gaagaagtggattaatgaggaagatctcaccc |
239 |
Q |
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| T |
4172079 |
caagaagtggatttatgaggaagatctcaccc |
4172048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 4159723 - 4159952
Alignment:
| Q |
8 |
gataatgtgcagcgtctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctca |
107 |
Q |
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| T |
4159723 |
gataacgtgcagcgtctcatgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctca |
4159822 |
T |
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| Q |
108 |
cagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcctgatcctaaatttaatgtttcatttcataattt |
207 |
Q |
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| T |
4159823 |
ctgttgcttcagagcttcttgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcaacttcatttcataactt |
4159922 |
T |
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| Q |
208 |
gaagaagtggattaatgaggaagatctcac |
237 |
Q |
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| T |
4159923 |
aaagaaatgggtttatgaggaagatctcac |
4159952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 4177824 - 4177730
Alignment:
| Q |
86 |
gaagaagaagcttatgctctcacagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcctgatcc |
180 |
Q |
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| T |
4177824 |
gaagaagagtcttatgctctcactgttgcttcagagcttcttgttagaggtagtgatctttgtttagcaccaatggttgagtgtgttcttgatcc |
4177730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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