View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-4 (Length: 1039)
Name: NF4647-Insertion-4
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 917; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 917; E-Value: 0
Query Start/End: Original strand, 8 - 1011
Target Start/End: Original strand, 26846249 - 26847253
Alignment:
| Q |
8 |
atctgcaaggtacattccttctctatttcttactactttcaacagggttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaactgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846249 |
atctgcaaggtacattccttctctatttcttactactttcaacagggttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaactgc |
26846348 |
T |
|
| Q |
108 |
aacacaactgcagttgaggcagtatcagccttctttgactgattttcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846349 |
aacacaactgcagttgaggcagtatcagccttctttgactgattttcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaata |
26846448 |
T |
|
| Q |
208 |
ggatgaagatcatagcctatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagaccgagcaatataggaaataacatttttattgca |
307 |
Q |
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| T |
26846449 |
ggatgaagatcatagcttatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagactgagcaatataggaaataacatttttattgca |
26846548 |
T |
|
| Q |
308 |
ggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacac |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846549 |
ggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacac |
26846648 |
T |
|
| Q |
408 |
agcaggtttcttctcacaggcgtaaagatcggtgcttcttcttcttgttcaaatccaacaatttccaatggctcagaactaagaacctcaagtccaagac |
507 |
Q |
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| T |
26846649 |
aacaggtttcttctcacaggcgtaaagatcggtgcttcttcttcttgttcaaatccaacaatttccaatggctcagaactaagaacctcaagtccaagac |
26846748 |
T |
|
| Q |
508 |
caagttcattttcaagtgaaaataatagttgttctcaaagttcattcaaagagaacatggtttgtgacacagtttcaaccagtagcatttccgaatactt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846749 |
caagttcattttcaagtgaaaataatagttgttctcaaagttcattcaaagagaacatggtttgtgacacagtttcaaccagtagcatttccgaatactt |
26846848 |
T |
|
| Q |
608 |
aattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaataacgttttctgtaataaggtaattggtgcacttttttgt |
707 |
Q |
| |
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| T |
26846849 |
gattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaataacgttttctgtaataaggtaattggtgcacttttttgt |
26846948 |
T |
|
| Q |
708 |
tctctttctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagttggatatgttttttggtattgtttcagg |
807 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846949 |
tccctttctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagttggatatgttttttggtattgtttcagg |
26847048 |
T |
|
| Q |
808 |
attattatgaacggaaccaagatcttcaagttataaacatgtctgactgggtaccacaatctcaagttagattccctcagcttagtgctaattcgaatgt |
907 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26847049 |
attattatgaacagaaccaagatcttcaagttataaacatgtctgactgggtaccacaatctcaagttagattccctcagcttagtgctaattcgaatgt |
26847148 |
T |
|
| Q |
908 |
tccccagattgattctttagatggggttatg-aaatgcaacatac-aaagctgttgaaggataacaaagtt-cttc-actagttcttcattcatcaaaac |
1003 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||| |||||| |||||||||||||| |
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| T |
26847149 |
tccc--aattgattctttagatggggttatgaaaatgcaacatacaaaagctgttgaaggat-acaaagttccttcaactagtccttcattcatcaaaca |
26847245 |
T |
|
| Q |
1004 |
atgtagag |
1011 |
Q |
| |
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|||||||| |
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| T |
26847246 |
atgtagag |
26847253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
297 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
381 |
Q |
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||||| |||||||||||||||| ||||||||||||| ||||||| ||||| || || ||||| ||||||||| |||| ||||||| |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 579 - 668
Target Start/End: Original strand, 54881424 - 54881513
Alignment:
| Q |
579 |
gtttcaaccagtagcatttccgaatacttaattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaat |
668 |
Q |
| |
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|||||||| || |||||||| |||||||| |||||||| || ||||||||||| | || |||||| ||||||||||||| |||||||| |
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| T |
54881424 |
gtttcaacaagcagcatttctgaatacttgattgaaacaatacctggttactgttttgaagaccttcttgatgcttctttcccacctaat |
54881513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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